Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2280 ATGGGAAGTTGCAGAAACTCTCCCTTGAAGCCATGGAAGAAGGGGCCAGCCAGAGGGAAGGGAGGCCCTCAGAACGCTTCGTGTGAGTATCGAGGTGTTCGACAAAGAACGTGGGGCAAATGGGTTGCCGAGATAAGAGAGCCGAAGAAGAGAACCAGGCTGTGGCTTGGTTCTTTTGCCACTGCTGAAGAAGCTGCCGTGGCTTATGATGAAGCTGCCATGAGACTCTATGGTCCTGATGCCTACTTCAATCTTCCTCACCTTCAACCAATAACCTCCAGTTCTGTTAGCAAGTCTCAGAAGTTCAAATGGTTTCCTTCGAAGAAGTTCCTTTCAAAGTTTCCTTCTCATGGACTCCTCAATGTGAATGCCCAGCCTGGTGTTGACTTAATCCATCAGAGGCTGCAACAACTTGAGCAGAAAGGGGTTTTAAGTCAGATCTCTTACAGTTCATCCAGTGACCCAAGTGCAGACATTCAGATGACCGGAAGCAAAAATGTTGATATTCCTTCAAAGGGACAGAAAGTTGAAGAAATATCAACAAATATCATAATCGAAGATGTTGAGGAAAAACCGCAGATTGATCTCCATGAGTTTCTTCAACAGCTGGGTATACTGAAAGAAGAAAGACAATCACAAAGTTCTAATAATAGCTCAGCAAGTTTCAGAGAGACTGAAGATTTATCAATTGGTTGCTGTGACCAACTTGGAGTGTTTTCTAGTGTTAATTGGGAGGCAATGATCGAGATGCATGGAATAGTAGATCCTCAGGGACTCGAAGCAGCCCATTTCCAAGCATATTGTGATATGAATGAAGAGCTCACTTTCTCCGCTTCCATTTGGAACTTTTGA 852 0.4437 MGSCRNSPLKPWKKGPARGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAVAYDEAAMRLYGPDAYFNLPHLQPITSSSVSKSQKFKWFPSKKFLSKFPSHGLLNVNAQPGVDLIHQRLQQLEQKGVLSQISYSSSSDPSADIQMTGSKNVDIPSKGQKVEEISTNIIIEDVEEKPQIDLHEFLQQLGILKEERQSQSSNNSSASFRETEDLSIGCCDQLGVFSSVNWEAMIEMHGIVDPQGLEAAHFQAYCDMNEELTFSASIWNF 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2280 283 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Alju03g2280 283 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 222 - -
Alju03g2280 283 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Alju03g2280 283 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Alju03g2280 283 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Alju03g2280 283 MobiDBLite consensus disorder prediction 1 28 - -
Alju03g2280 283 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Alju03g2280 283 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Alju03g2280 283 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Alju03g2280 283 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Alju03g2280 283 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2280 Alju-ChrAlju03 49690299 49691150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2280 5 283 AP2-EREBP Transcription Factor Family AT3G57600 52.113 9.64e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju03g2280 AP2 8.2e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g1139 01 8799839 8800657 Alju03g2280 03 49690299 49691150 CCT
Alju03g2280 03 49690299 49691150 Alju03g2280 03 49690299 49691150 ECH