Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2279 ATGAATCACTTGACTGTGGAAACTGAAGATAGTTTTGCAAGCCTGCTTGACCTTGCAGCTAATAATGACGTTGAGCATTTCAAAAGATCAATTGAGCAAGATCCTTCCTCTGTTGATGAGGTTGGACTGTGGTATGGTCGCCAAAAGGGGTCAAAGCAGATGGTCAACGAGCACCGGACACCTTTGATGGTTGCTGCTACTTATGGCAGCATTGATGTCATAAAGTTGATTCTTTCATTATCTTATGCAGATATTAATCGATCATGTGGGCTTGACAAAAGCACAGCTCTTCATTGCGCGGCATCAGGTGGGGCTGTAAATGCTGTTGATGTGGTGAAGCTGCTGCTGGCAGCTGGTGCTGATCCAAATTCTGTTGATGCTAATGGTCACTATCCAGTTGATGTTGTTGTGGTACCTCCCAAGCTTGAACATGTGAAAAGTATTCTTGAAGAACTTCTTCAAACAGATTGTTCAGTAGCAGGGTGTGGTCTTAGGGTGGTCACGGCTACAACAAATTCAAACTCTCCCCCTCCATCAACTTCTCCAGAGAATGGGTCTCTTTCTTCATTAGAGTTCCATCTGAAGCTAAAGTTAAAGGAAGCTAATGCTTTATCTGCATCAGAGAAGAAAGAATATCCTGTTGATCCATCTCTTCCTGACATAAAAAACAGCATCTACTCAACTGATGAGTTCCGAATGTATTCTTTCAAGGTTCGACCATGCTCACGTGCCTATTCACATGATTGGACTGAATGTCCTTTTGTCCACCCAGGGGAAAATGCTCGGAGAAGGGACCCAAGGAAGTTTCATTATAGCTGTGTACCTTGTCCTGATTTTCGGAAAGGAGCTTGCCGTCGAGGAGATATGTGTGAATATGCTCATGGTGTTTTTGAGTGCTGGCTGCATCCAGCTCAATATCGGACCCGCCTCTGCAAGGATGGGATCAGTTGCTCAAGAAGAGTTTGCTTCTTTGCCCATACAGCTGAGGAACTTAGGCCGTTGTATGTTTCAACTGGTTCTGCTGTTCCATCACCACGCTCTAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAGCCTGTTACCAGGCTCCCCTTCTTCAATGTCTGTCATGTCTCCTTCACCTTTCACTCCACCTATGTCACCGTCTGCCACGGGCATGTCACACTCTTCTGTTGCTTGGCCTCAACCTAATGTTCCAAACCTGCATCTGCCAGGAAGTAATATTCACTCCAGTCGTTTGAGATCTTCACTCAGTGCTAGGGATATCCCTGTAGAAGACTTTGATTTGTTGCATGACTATGATGTTCAGCAACACCAGCTACTTAATGAGATGTCTTGCCTTAACCAACAATCTATGAATTCTAATAACCTGAACCGCTCTGGTCGTATGAAGACCCCCCTGACCCCTTCAAATCTTGATGATCTCTTTTCTGCTGAGAGTTCTTCCCCCCGGTTTGCTGATCCAACATTGAATTCAGCTGTCTTTTCACCCACACACAAATCAGCTGTCCTTAATCAATTTCAGCAGCAGCAAAGCTTGCTCACACCCGTGAATACAAATTTTTCTTCCAAGAATGTTGAGCATCCTTTGTTACACGCCTCATTCCAAACATCAGGAAGGATGTCTCCACGTAATATGGAACCCATCTCACCAATGAGCTCTAGGTTTTCTGTGCTATCTCAACGTGAAAAGCAGCAACAGTTTCGTAGCCTTAGCTCACGGGATCTTGGCTCAAACTCTGCTGCTGCTGTTGCTGCAGCCGCCAGTTTCAGTGACAGTTCTTGGTCAGAATGGGGATCCAGCAATGGTAAATTGGATTGGGCTGTCACTGCTGATGAATTGGGCAAGCACCGTAGATCATCGTCGTTTGAGTTTGGAAGCAACAGCGAGGAGCCAGATTTATCATGGGTGCAGTCACTTGTGAAAGAATCTCCAACTGAGATTAAGGAGAAATTGGGAACAACTGTCTCAAGTGTTGATGTGAGCACTGGGCAACAGCCAGACAAACGAAACAGAAATTACCGAGGGTCATTAGAGTTAAGTTCTCGAGAACTCCAAATTGGCCCAGTTTTGGGGATGAAAGTACAGGACGATGCATCTGATATTTCTCTCGCGCCATGGAATCCAGAATTGTGGATGCCATGGTGCTGGTAG 2160 0.4551 MNHLTVETEDSFASLLDLAANNDVEHFKRSIEQDPSSVDEVGLWYGRQKGSKQMVNEHRTPLMVAATYGSIDVIKLILSLSYADINRSCGLDKSTALHCAASGGAVNAVDVVKLLLAAGADPNSVDANGHYPVDVVVVPPKLEHVKSILEELLQTDCSVAGCGLRVVTATTNSNSPPPSTSPENGSLSSLEFHLKLKLKEANALSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGISCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSLLPGSPSSMSVMSPSPFTPPMSPSATGMSHSSVAWPQPNVPNLHLPGSNIHSSRLRSSLSARDIPVEDFDLLHDYDVQQHQLLNEMSCLNQQSMNSNNLNRSGRMKTPLTPSNLDDLFSAESSSPRFADPTLNSAVFSPTHKSAVLNQFQQQQSLLTPVNTNFSSKNVEHPLLHASFQTSGRMSPRNMEPISPMSSRFSVLSQREKQQQFRSLSSRDLGSNSAAAVAAAASFSDSSWSEWGSSNGKLDWAVTADELGKHRRSSSFEFGSNSEEPDLSWVQSLVKESPTEIKEKLGTTVSSVDVSTGQQPDKRNRNYRGSLELSSRELQIGPVLGMKVQDDASDISLAPWNPELWMPWCW 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2279 719 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Alju03g2279 719 MobiDBLite consensus disorder prediction 371 392 - -
Alju03g2279 719 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Alju03g2279 719 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Alju03g2279 719 MobiDBLite consensus disorder prediction 536 558 - -
Alju03g2279 719 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Alju03g2279 719 PANTHER UNKEMPT FAMILY MEMBER 17 646 IPR045234 -
Alju03g2279 719 MobiDBLite consensus disorder prediction 657 677 - -
Alju03g2279 719 SMART ANK_2a 57 87 IPR002110 GO:0005515
Alju03g2279 719 SMART ANK_2a 92 124 IPR002110 GO:0005515
Alju03g2279 719 Gene3D - 1 226 IPR036770 -
Alju03g2279 719 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Alju03g2279 719 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Alju03g2279 719 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515
Alju03g2279 719 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Alju03g2279 719 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Alju03g2279 719 SUPERFAMILY Ankyrin repeat 15 150 IPR036770 -
Alju03g2279 719 MobiDBLite consensus disorder prediction 657 673 - -
Alju03g2279 719 Gene3D - 271 333 - -
Alju03g2279 719 Pfam Ankyrin repeats (3 copies) 52 126 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2279 Alju-ChrAlju03 49683372 49685656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2279 5 646 C2H2 Transcription Factor Family AT5G12850 55.743 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju03g2279 Ank_2 4.6e-10 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g2279 03 49683372 49685656 Alju03g2279 03 49683372 49685656 ECH