Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2274 ATGGCATGTACCCCTTACCCATATTCAGGTCCCAATTATGTGGGAGTGACCTCAAGTCATGGACCTCAGCCTCTGGTGCATCCTCATGGTGTAGGACTTCATACTGCTCAAATGGTGTTACCACTGGAAATAGCAGAAGAGGAGCCTGTTTACGTTAATGCCAAGCAATACCATGGAATTTTGAGGCGCAGGCGATTACGTGCCAAGGCTGAGCTCGAAAAGACGCTCATAAAAGGAAGGAAGCCTTACCTTCACGAGTCTCGACATTTGCATGCAATGAGAAGAGCCAGGGGATGTGGCGGCCGTTTCCTCAACACAAAGAAGCTTGCTAATAGTGATACAACTTCTGCCAACACTAGTACAACCAACAATAATGAGGATGCTGCTACTAATAAAACAATTTCTCCTGATTCAAACTCAACTTCTGATAAAAACAAGCACTTCTCATCACACGTTCAGGGATTTGATCTTGAAGGCGACTTCTCGGCTCACGAGTCTAAATCGCTCAATCACACTGGGGTTGGAAGAGTCCTCACCATTAATTAA 546 0.4542 MACTPYPYSGPNYVGVTSSHGPQPLVHPHGVGLHTAQMVLPLEIAEEEPVYVNAKQYHGILRRRRLRAKAELEKTLIKGRKPYLHESRHLHAMRRARGCGGRFLNTKKLANSDTTSANTSTTNNNEDAATNKTISPDSNSTSDKNKHFSSHVQGFDLEGDFSAHESKSLNHTGVGRVLTIN 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2274 181 ProSiteProfiles NF-YA/HAP2 family profile. 46 106 IPR001289 GO:0003700|GO:0006355
Alju03g2274 181 ProSitePatterns NF-YA/HAP2 subunit signature. 51 71 IPR018362 GO:0003677|GO:0016602
Alju03g2274 181 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 48 103 IPR001289 GO:0003700|GO:0006355
Alju03g2274 181 Gene3D - 46 107 - -
Alju03g2274 181 SMART cbf3 45 106 IPR001289 GO:0003700|GO:0006355
Alju03g2274 181 PRINTS CCAAT-binding transcription factor subunit B signature 80 103 IPR001289 GO:0003700|GO:0006355
Alju03g2274 181 PRINTS CCAAT-binding transcription factor subunit B signature 49 71 IPR001289 GO:0003700|GO:0006355
Alju03g2274 181 MobiDBLite consensus disorder prediction 110 148 - -
Alju03g2274 181 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 158 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2274 Alju-ChrAlju03 49641580 49644059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2274 1 141 CCAAT-HAP2 Transcription Factor Family AT5G12840 46.099 4.97e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Alju03g2274 CBFB_NFYA 5.1e-26 No_clan