Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2258 ATGATCAAAACGCGGCGTTTAACGATTTGCCTCCGCCGGGTGCCTATCTCAATTCTTCTGGTGGTATTTCTGTGCTATTTTACATTATCGGAAATGGCTAATCATACTGATTCACTTATTCCATTAGACATTAATGCCAATGAATGTGAAGTTGATGTGACATATCATTCACCAAAGGAACTTGGCCCTGAAATCCGTAATTCAGATGAAAATGATGTTGTTCCTACTCCACATAACGGTATGATATTTGGTTCAGAGGATGAGGTGAGATCATATTATACAAAATATGCCAGCCAAGTAGGTTTTGGCGTCATGACAAGAACCTCAAGGAAGGTAGCTGATGGCAAGATTGGATATTTTATACTTGCATGTTCTAGAGAGGGATTTAGAAGAAACAGTAGAAGAAATCCCATCAGAAGTGTTCCATCAAGGAAACAGAAGTGTGAAGCCAGGATCAACGTTTCTTTATGTAAAGATGGATTTTACCGGATTCAAACAGTTACGCTTAATCACAATCATGAACTGAGTCCAGGTCAGGCCAAGCTTAATGTTGATATTGACATGCGAGCTAAAAGGAAACTAGACCCAGAAGATCAAACTGAGGAGAGGATGAACAAGAGTTTCCGGCCTTTAGCGGTTGGAAATGGGGTTTATGACAATGTGATGTCGTGTCCAAATGATTGTGGAAACTGCATTCGGACAGGAGGCCGGTTGATTGGTCTGGATGGAGATGGTAATGCTCTTTATAAATATTTCATGCGCATGCAAGAACAAGATTGCAATTTCTTCTATGTCATAGATTTGGATGATTATTTATGTGTGAGGAATGTTTTCTGGGCTGATGCTAGAAGTAGAGCTGCATACAAGTCGTTTGGTGATGTGGTTACATTGGATACAACATATGTCTCTGACCAATACAAATTACCCCTCGTATCTTTTGTTGGAGTGAACCATCATGGCCAATCTATACTTTTTGGTTGTGGGTTGATGTCGTGCAGGGACACGAAGTCGTTTGTTTGGTTGTTACAATCATGGTTACATTGCATGTATGGTGTTTCACCGAAAGGCATCATAACAGATGAATGCAAGGCCTTGCTAAATGCAATTAAAATTGTATTCCCCTTTGCTCGTCATCGGTGGTGTTTATGGCATATAATGAAAAAAATTCCTGAAAAGTTAGGTCAACGTGCTGACTACAAGCTGTTAAGTTGTCGTTTAAAAACTGCTATATACGATGCACCTGCTCCCAATGAATTCGAGATGAATTGGAAAACAACCATGAAGGAATTTGGTCTAGAGGACAATGAATGGCTGAATGAGTTGTACCTTGAGCGACATCGATGGGTGCCTATCTTTGTAAAGAGTGAGTTTTGGGCTGGAATGTCTACTATTCGATATGGTGAAATCATGCATCCTTTTTTTGATGGATTTGTTGGTTGCCAGACTACGTTGAAACAATTTCTTGATGCATATGATAATGCATTGCAAGCCAGGGCAGAGAAAGAGTTTGAAGCTGATTTCCGTTCATTTTGCATTACTCTTTCTTGTGCTACCAAGTCTCCATTTGAGCGGCAGTTTCAGACAGCTTACACTCACTCAAAGTTTTTGGAGGTTCAGCGAGAGTTTGTTGGAAAGGCTGATTGTAACATGGTTGTTGTTCATGATGAAGGTTCTGTTTGTCGTTATAATGTTATTGAGGATGTGATGGTTGAAGGTAAACCTAAAGACGTTTCATATGGAGTTATATTTGACAGGGTAAACTGTGATGTGAAGTGCGCTTGCCACATGTTTGAGTTCAAAGGAATAATTTGTAGGCACTCACTTGCTGTACTGTCCCAAGAGCGAGTTAAAGAGATTCCATGTAAGTATGTTTTGGATAGGTGGAGAACAAATCTAAAGAGGAGACATGTATATGTGAGGACTAGTTACACTGTCAGACAGCTCAAACCTCGAATGGAAAGATTTGATTTATTATGCAAGCAATTTGACTCTGTAGCTGATATTGCTGCTGAATTTGAGGAAACAAGTGCTTTTGTAAGTAATACCCTTTGTGACTTGAAGGAGAAACTGGAAGCATGGGCAAGCCATATGAGAAACTCATCTGAGGCGGCAGCACCAATAAGCTGTGCAATTAACGGTGCTTCTTGA 2148 0.4013 MIKTRRLTICLRRVPISILLVVFLCYFTLSEMANHTDSLIPLDINANECEVDVTYHSPKELGPEIRNSDENDVVPTPHNGMIFGSEDEVRSYYTKYASQVGFGVMTRTSRKVADGKIGYFILACSREGFRRNSRRNPIRSVPSRKQKCEARINVSLCKDGFYRIQTVTLNHNHELSPGQAKLNVDIDMRAKRKLDPEDQTEERMNKSFRPLAVGNGVYDNVMSCPNDCGNCIRTGGRLIGLDGDGNALYKYFMRMQEQDCNFFYVIDLDDYLCVRNVFWADARSRAAYKSFGDVVTLDTTYVSDQYKLPLVSFVGVNHHGQSILFGCGLMSCRDTKSFVWLLQSWLHCMYGVSPKGIITDECKALLNAIKIVFPFARHRWCLWHIMKKIPEKLGQRADYKLLSCRLKTAIYDAPAPNEFEMNWKTTMKEFGLEDNEWLNELYLERHRWVPIFVKSEFWAGMSTIRYGEIMHPFFDGFVGCQTTLKQFLDAYDNALQARAEKEFEADFRSFCITLSCATKSPFERQFQTAYTHSKFLEVQREFVGKADCNMVVVHDEGSVCRYNVIEDVMVEGKPKDVSYGVIFDRVNCDVKCACHMFEFKGIICRHSLAVLSQERVKEIPCKYVLDRWRTNLKRRHVYVRTSYTVRQLKPRMERFDLLCKQFDSVADIAAEFEETSAFVSNTLCDLKEKLEAWASHMRNSSEAAAPISCAINGAS 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2258 715 SMART 26again6 590 617 IPR006564 GO:0008270
Alju03g2258 715 Pfam FAR1 DNA-binding domain 91 176 IPR004330 -
Alju03g2258 715 ProSiteProfiles Zinc finger SWIM-type profile. 579 615 IPR007527 GO:0008270
Alju03g2258 715 Pfam SWIM zinc finger 589 612 IPR007527 GO:0008270
Alju03g2258 715 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 68 692 IPR031052 GO:0006355
Alju03g2258 715 Pfam MULE transposase domain 294 388 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2258 Alju-ChrAlju03 49546708 49549388 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Alju03g2258 MULE 4.6e-32 CL0219