Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2253 ATGATGATGGAGGAAGGGAAGAATAATAAAGAGTCGTTGTTGGATCATCATCAGTTGCATGCAAGGAAGGGGAATCCGCCACCTTTCTTGTTAAAGACATACATGCTGGTGGAGGATCCGGCCACCGACAACATCATATCGTGGAACCCTAACGGCACGGCGTTTGTGGTGTGGCAGCCGGCGGAGTTTGCCCGTGACCTTCTTCCCACTCTCTTCAAGCACAGCAACTTCTCCAGCTTTGTTCGCCAGCTCAATACCTACGGATTTCGGAAAGCGGCAACGAACAGATGGGAATTTTGCAACAACAAATTCAGGAAAGGGGAGAAGGAAAAACTAAGTGAGATCAGACGAAGAAAGGCGTGGTCCAACAGGCAACAGCAACAAGCAAATCATAATCAGGAATATTCTGATCAGGAAGAGCAAAAGTCATCTTCAACCTCTTCGTCTTCGGGATATTCTAATCTGTTGGATGAGAACAAGAGACTCAAGAGACAGAACGGGGCACTGAACTCAGAGCTGGCGGCCATGAAGAGGAAGTGCAGGGACCTGCTTGAGTTGGTGGCTAAGCATGCCAAGAAAAACGAGGAAGAAGAAGACGAGAAGGCGCCTATGTTATTCGGGGTGAGGCTTCATGTGAAGCGAGGACAAAGAGATTTAAACACAAATACAAGTCCCAGTATTTTCTTGCCCCAGTCATGCAAATAA 705 0.4752 MMMEEGKNNKESLLDHHQLHARKGNPPPFLLKTYMLVEDPATDNIISWNPNGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKAATNRWEFCNNKFRKGEKEKLSEIRRRKAWSNRQQQQANHNQEYSDQEEQKSSSTSSSSGYSNLLDENKRLKRQNGALNSELAAMKRKCRDLLELVAKHAKKNEEEEDEKAPMLFGVRLHVKRGQRDLNTNTSPSIFLPQSCK 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2253 234 SMART hsfneu3 25 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju03g2253 234 MobiDBLite consensus disorder prediction 111 159 - -
Alju03g2253 234 Pfam HSF-type DNA-binding 29 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju03g2253 234 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju03g2253 234 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju03g2253 234 PRINTS Heat shock factor (HSF) domain signature 29 52 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju03g2253 234 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 23 194 IPR027725 -
Alju03g2253 234 Coils Coil 152 200 - -
Alju03g2253 234 FunFam Heat stress transcription factor B-4 21 119 - -
Alju03g2253 234 SUPERFAMILY "Winged helix" DNA-binding domain 25 118 IPR036390 -
Alju03g2253 234 Gene3D - 20 120 IPR036388 -
Alju03g2253 234 MobiDBLite consensus disorder prediction 122 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2253 Alju-ChrAlju03 49504477 49505436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2253 26 190 HSF AT2G41690 58.889 3.46e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Alju03g2253 HSF_DNA-bind 1.2e-31 CL0123