Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2225 ATGGGCATTATGGAAGTAGATGAGGAACCGCCTACAACTGTTTCTGCAGAAACCTCTATACCATCATCTGATGCTCAAGGCATGGTTTCTCCTGTTCCTGCTGCGCTGCCCCCGCCAATGCAACCTGTAGTTCCAACCATCGTTCCACCATCTCTTGTGCCCCCTATTGCTCCAATTCCTTCAATTCCTCCTCCTACTAGTGTCCGCCCACTGGCACCACTTCCTGTTCGCCCGCCATCTATTAGGCCACACATGTCACAAAATGGTGAGGTTGGATCAACTGACTCCGATTCAGATCATGATGACTCCGGCCCAGGAATAAACAAGGGTACAGGGGAGTATGAGATATCAGAAGAGAGTAGACTGGTAAGAGAGAGGCAGGAAAAAGCTATGCAGGAACTTATGATGAAGAGGCGTGCTGCTGCTCTGGCTGTTCCAACAAATGACATGGCTGTGCGAGCTCGACTTCGCCGTCTTGGTGAACCCATCACTCTTTTTGGTGAAAGGGAGATGGAGAGAAGAGACAGGTTGCGAATGATTATGGCAAAGTTGGATGCTGAAGGTCAGCTGGAAAAGCTGATGAAGGCTCATGAAGAAGAAGAGGCTGTAGCCTCTGCTGCAAAGGAAGAAGCCGATGAAGACCTACAGTATCCCTTTTACACTGAAGGGTCAAAGGCCCTCCTGGATGCCAGAGTTGATATTGCTAAGTTTTCTTTAGTAAGAGCAGCAACACGTCTTCATCGTGCTCGGAGAAGAAGAGATGATCCCGATGAAGATATAGATGCGGAAATAGATTGGGCACTGAAGCAGGCAGAGAACTTGGTTCTTGATTGCAGTGAGATTGGAGATGATCGGCCACTTTCTGGTTGCTCCTTCTCAGCAGATGGAAAATGCCTTGCTACCTGTTCTCTGACTGGAGCTGCAAAGCTTTGGAGCATGCCTGAAGTTAAAAAAATTTCCACCTTAAAGGGGCACACAGAGCGTGCTACTGATGTTGCTTACTCTCCTGTGCATAACCATTTAGCAACTGCCTCTGCTGACCGCACTGCACGGTATTGGAATGATCAAGGGTCTCTTTTAAAGACATTTGAGGGTCATCTTGATCGGCTTGCTCGTATTTCCTTCCATCCATCTGGGAAGTACTTGGGCACTGCCAGCTTTGACAAGACATGGAGATTGTGGGACATAGAAACAGGAGAGGAGTTGCTTCTCCAAGAAGGTCACAGTAGGAGTGTATATGGCTTAGCTTTCCACCATGATGGATCATTAGCTGCATCTTGTGGACTGGATTCACTTGCTCGAGTTTGGGACCTTCGCACTGGGAGAAGTATTCTTGCACTGGAAGGTCATGTCAAGCCGGTTCTTGGCATCAGTTTTTCACCTAATGGTTATCATTTAGCTACAGGTGGTGAAGACAACACCTGTCGCATTTGGGATTTGAGAAAGAAGAAATCCTTGTACACCATTCCAGCTCACTCTAATTTAATATCACAAGTCAAATTTGAGCCGCAAGAGGGTTATTTTTTGGTAACAGCTTCGTATGATATGACAGCTAAGGTATGGTCAGCTCGTGACTTTAAGCCTGTCAAAACGTTATCTGGGCATGAGGCAAAAGTTACTTCTCTTGATGTTCTTGGAGATGGACGGTATATTGCTACTGTCTCCCATGATCGCACCATAAAGCTGTGGTCCTGCAACATGGCTGATGAACAAACTATGGATGTTGACTGA 1731 0.4691 MGIMEVDEEPPTTVSAETSIPSSDAQGMVSPVPAALPPPMQPVVPTIVPPSLVPPIAPIPSIPPPTSVRPLAPLPVRPPSIRPHMSQNGEVGSTDSDSDHDDSGPGINKGTGEYEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEEEEAVASAAKEEADEDLQYPFYTEGSKALLDARVDIAKFSLVRAATRLHRARRRRDDPDEDIDAEIDWALKQAENLVLDCSEIGDDRPLSGCSFSADGKCLATCSLTGAAKLWSMPEVKKISTLKGHTERATDVAYSPVHNHLATASADRTARYWNDQGSLLKTFEGHLDRLARISFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYGLAFHHDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLSGHEAKVTSLDVLGDGRYIATVSHDRTIKLWSCNMADEQTMDVD 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2225 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 447 481 - -
Alju03g2225 576 Pfam WD domain, G-beta repeat 406 437 IPR001680 GO:0005515
Alju03g2225 576 Pfam WD domain, G-beta repeat 527 564 IPR001680 GO:0005515
Alju03g2225 576 Pfam WD domain, G-beta repeat 318 354 IPR001680 GO:0005515
Alju03g2225 576 Pfam WD domain, G-beta repeat 357 395 IPR001680 GO:0005515
Alju03g2225 576 Pfam WD domain, G-beta repeat 485 522 IPR001680 GO:0005515
Alju03g2225 576 Pfam WD domain, G-beta repeat 445 479 IPR001680 GO:0005515
Alju03g2225 576 Pfam pre-mRNA processing factor 4 (PRP4) like 152 178 IPR014906 -
Alju03g2225 576 ProSitePatterns Trp-Asp (WD) repeats signature. 382 396 IPR019775 -
Alju03g2225 576 MobiDBLite consensus disorder prediction 63 120 - -
Alju03g2225 576 MobiDBLite consensus disorder prediction 1 34 - -
Alju03g2225 576 MobiDBLite consensus disorder prediction 63 80 - -
Alju03g2225 576 PANTHER WD40 REPEAT PROTEIN 98 565 - -
Alju03g2225 576 CDD WD40 286 564 - -
Alju03g2225 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 363 400 - -
Alju03g2225 576 SUPERFAMILY PRP4-like 130 185 IPR036285 -
Alju03g2225 576 Gene3D - 264 447 IPR015943 GO:0005515
Alju03g2225 576 Coils Coil 183 214 - -
Alju03g2225 576 SUPERFAMILY WD40 repeat-like 279 563 IPR036322 GO:0005515
Alju03g2225 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 405 442 - -
Alju03g2225 576 SMART pr04_2 147 200 IPR014906 -
Alju03g2225 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 489 531 IPR001680 GO:0005515
Alju03g2225 576 FunFam U4/U6 small nuclear ribonucleoprotein Prp4 490 566 - -
Alju03g2225 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 489 522 - -
Alju03g2225 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 532 564 IPR001680 GO:0005515
Alju03g2225 576 ProSitePatterns Trp-Asp (WD) repeats signature. 424 438 IPR019775 -
Alju03g2225 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 532 564 - -
Alju03g2225 576 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 322 354 - -
Alju03g2225 576 Gene3D - 123 192 IPR036285 -
Alju03g2225 576 ProSitePatterns Trp-Asp (WD) repeats signature. 466 480 IPR019775 -
Alju03g2225 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 447 488 IPR001680 GO:0005515
Alju03g2225 576 SMART WD40_4 271 312 IPR001680 GO:0005515
Alju03g2225 576 SMART WD40_4 482 522 IPR001680 GO:0005515
Alju03g2225 576 SMART WD40_4 440 479 IPR001680 GO:0005515
Alju03g2225 576 SMART WD40_4 315 354 IPR001680 GO:0005515
Alju03g2225 576 SMART WD40_4 398 437 IPR001680 GO:0005515
Alju03g2225 576 SMART WD40_4 525 564 IPR001680 GO:0005515
Alju03g2225 576 SMART WD40_4 356 395 IPR001680 GO:0005515
Alju03g2225 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 363 404 IPR001680 GO:0005515
Alju03g2225 576 MobiDBLite consensus disorder prediction 12 26 - -
Alju03g2225 576 Gene3D - 448 575 IPR015943 GO:0005515
Alju03g2225 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 354 IPR001680 GO:0005515
Alju03g2225 576 ProSiteProfiles Trp-Asp (WD) repeats profile. 405 446 IPR001680 GO:0005515
Alju03g2225 576 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 262 446 - -
Alju03g2225 576 PRINTS G protein beta WD-40 repeat signature 341 355 IPR020472 -
Alju03g2225 576 PRINTS G protein beta WD-40 repeat signature 466 480 IPR020472 -
Alju03g2225 576 PRINTS G protein beta WD-40 repeat signature 382 396 IPR020472 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2225 367 563 U-box Gene Family AT2G33340 23.529 1.10e-11 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g2225 03 49273330 49276345 Alju03g2225 03 49273330 49276345 ECH