LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju03g2202	ATGTCCCTTGAAGATTCTCTAAGATCTCTTTCCCTCGACTACCTCAACCTTCTCATCAACGGCCAGGCCTTCAGTGACGTCACCTTCAGCGTCGAGGGTCGTCTTGTCCACGCTCATCGATGCATCCTCGCTGCTCGGAGCCTCTTCTTCAGGAAATTCTTCTGCACACCGGAGCCTCCGTCGGGGCTGGACCCGGCGGGTTCTCGGGTCAACTCGGCTGGCTCGGGCCAAAGGCCAGGGATCATTCCTGTGAACTCTGTCAGTTACGAAGTGTTCCTGTTGCTTCTTCAGTTCCTGTACAGCGGCCAGGTCTCTATTGTGCCTCAGAAGCACGAGCCGCGGCCCAATTGTGGGGAGCGAGGATGTTGGCACACGCATTGCACCTCCGCCGTTGATCTTTCCCTCGACACTCTCGCCGCCGCTAGATCTTTCGGTGTTGAACAGCTTGCATTGCTCACCCAGAAACAGTTGGCGAGTATGGTGGAGAAGGCGTCAATTGAAGATGTAATGAAAGTGCTGGTAGCATCAAGAAAGCAAGACATGCACCAGCTGTGGGCCACTTGCTCCCACCTGGTTGCCAAGTCAGGTCTCCCACCCGAAGTCCTCGCCAAACACCTCCCCATCGAAGTCGTTGCCAAGATTGAAGAGATTCGTCTCAAGTCCTCCTTCACCCGCCGCTCTCTATTGCCCTACCACCACCCCGACCTCCGCATCGCCGACCTCGAGGACCAGAAAATCCGGCGAATGAAAAGAGCACTCGACGCCTCCGATGTGGAGCTCGTTAAGCTCATGGTAATGGGGGAAGGCCTAAATCTTGATGAAACATTGGCCTTGCATTATGCTGTAGAGAATTGCAGCCGAGAAGTGGTGAAGGCATTGTTGGAGCTCGGGGCCGCCGATGTGAACTACCCGGCCGGGCCCGCCGGGAAAACTCCGCTCCACATTGCGTCGGAGATGGTATCGCCGGACATGGTGGCAGTGCTGTTGGACCACCATGCTGATCCTAACGTGCGGACGGTGGATGGTGTGACCCCACTGGACATCCTGAGAACCCTAACTTCAGATTTTCTGTTCAAAGGGGCCGTACCCGGGCTAACCCACATAGAACCCAACAAGCTGAGGCTGTGCTTGGAACTGGTTCAATCGGCGGCTCTAGTGATTTCTCGAGAAGAAGGAAATGCGAACAATCCTCCCACATCAACGGCCATATATCCGCCACTGAGTGAGGATCATAGCAGTGGCAGCAGCAGCAACCTGAACCTGGACTCTAGGTTGGTTTATCTGAATCTTGGCGCCGCCGCGACGTCGGGTCAAATAGTTTCCAGATTGGACGGAGATGACGATTGCCACAGGGATCCCATGAACCGTCATGGTTCACAAGGAGGTGGTGGATGTGACCCAACAATGTACCACCACCATCACTCTCATGATTTCTAG	1437	0.5511	MSLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCTPEPPSGLDPAGSRVNSAGSGQRPGIIPVNSVSYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLSLDTLAAARSFGVEQLALLTQKQLASMVEKASIEDVMKVLVASRKQDMHQLWATCSHLVAKSGLPPEVLAKHLPIEVVAKIEEIRLKSSFTRRSLLPYHHPDLRIADLEDQKIRRMKRALDASDVELVKLMVMGEGLNLDETLALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIASEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVISREEGNANNPPTSTAIYPPLSEDHSSGSSSNLNLDSRLVYLNLGAAATSGQIVSRLDGDDDCHRDPMNRHGSQGGGGCDPTMYHHHHSHDF	478

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju03g2202	478	SUPERFAMILY	Ankyrin repeat	267	351	IPR036770	-
	Alju03g2202	478	Pfam	Ankyrin repeats (3 copies)	257	338	IPR002110	GO:0005515
	Alju03g2202	478	Gene3D	-	241	356	IPR036770	-
	Alju03g2202	478	ProSiteProfiles	BTB domain profile.	25	108	IPR000210	GO:0005515
	Alju03g2202	478	PANTHER	BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2	1	474	IPR044284	GO:0099402
	Alju03g2202	478	SUPERFAMILY	POZ domain	9	191	IPR011333	-
	Alju03g2202	478	CDD	BTB_POZ_NPR_plant	8	161	-	-
	Alju03g2202	478	Gene3D	Potassium Channel Kv1.1; Chain A	4	194	IPR011333	-
	Alju03g2202	478	Pfam	BTB/POZ domain	16	109	IPR000210	GO:0005515
	Alju03g2202	478	SMART	ANK_2a	308	337	IPR002110	GO:0005515
	Alju03g2202	478	SMART	ANK_2a	273	303	IPR002110	GO:0005515
	Alju03g2202	478	MobiDBLite	consensus disorder prediction	391	416	-	-
	Alju03g2202	478	ProSiteProfiles	Ankyrin repeat region circular profile.	308	338	-	-
	Alju03g2202	478	ProSiteProfiles	Ankyrin repeat profile.	308	340	IPR002110	GO:0005515
	Alju03g2202	478	Pfam	Domain of unknown function (DUF3420)	196	249	IPR024228	-
	Alju03g2202	478	FunFam	regulatory protein NPR5 isoform X2	239	356	-	-
	Alju03g2202	478	FunFam	regulatory protein NPR5 isoform X1	4	194	-	-
	Alju03g2202	478	SMART	BTB_4	25	161	IPR000210	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju03g2202	Alju-ChrAlju03	49104205	49106538	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	TRAF	Alju03g2202		BTB	1.8e-14	CL0033

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Alju01g1034	01	7754635	7756927	Alju03g2202	03	49104205	49106538	CCT
	Alju03g2202	03	49104205	49106538	Alju03g2202	03	49104205	49106538	ECH