Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2189 ATGTTAGCTTTATCGCCTTCTCTATTTGCACCCATTGAGTGGGCCTTGGAGGAACCCACAAGTTGTAATGATCAGAACTTGTTTTACAAAGACGGAGCTACTCTTCAGCTTAGTTGCTCGCCGCCACCAGATCATCAGGTTCTGGTTCAGGTTGATGAGGCTCAGAGATCTAGGCCAATATCCCTTGCCGTTAGTGGAGAAGACCCTATCATGCTCAAAAAGCTTAACCACAATGCTAGTGAACGTGATCGTCGCAAGAAGATCAATAGCTTGTATTCCTCACTTCGTTCTATGCTTCCTCTGTCTGATCAAACGAAAAAGTTAAGCATTCCGGCAACAATTTCACGAGTCCTAAAGTACGTACCGGAGTTACAACAACAAGTGGAAGGGCTTATGAAGAAAAAAGAGGAGCTTTTGTTGAGAATCTCTCGGCAAAGAGACGCGTCAGCCAAAGAATGTCGAAGGAAAATGGCTCATCACTACGCTGCCACTGCTTGTGTGATTTCAACAAGCAGGCTCAATCATAACGAAGCTGTTGTTCAGATTTACTCTGACAAGTTCCACAAAACTCCTCTTCCAGAGATATTGTTGTGTTTAGAGAAGGAAGGGATTTTACTGCTAAATGCTTCCACCTTTGACACCTTTGGACATTGGGTCTTCTATAACTTGCATTTGCAGATGGATGAAACTTGTAGAATAGAGCCAGAAATTCTAAGCGAGAAGATTTTGTCAATTTATGAGAGGAAGGAAGAGAAATTTCAATGTTATTAA 771 0.4228 MLALSPSLFAPIEWALEEPTSCNDQNLFYKDGATLQLSCSPPPDHQVLVQVDEAQRSRPISLAVSGEDPIMLKKLNHNASERDRRKKINSLYSSLRSMLPLSDQTKKLSIPATISRVLKYVPELQQQVEGLMKKKEELLLRISRQRDASAKECRRKMAHHYAATACVISTSRLNHNEAVVQIYSDKFHKTPLPEILLCLEKEGILLLNASTFDTFGHWVFYNLHLQMDETCRIEPEILSEKILSIYERKEEKFQCY 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2189 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 124 IPR011598 GO:0046983
Alju03g2189 256 Coils Coil 121 141 - -
Alju03g2189 256 Pfam Helix-loop-helix DNA-binding domain 73 125 IPR011598 GO:0046983
Alju03g2189 256 Gene3D - 71 157 IPR036638 GO:0046983
Alju03g2189 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 142 IPR036638 GO:0046983
Alju03g2189 256 FunFam Transcription factor ORG2 68 162 - -
Alju03g2189 256 SMART finulus 78 130 IPR011598 GO:0046983
Alju03g2189 256 CDD bHLH_AtORG2_like 73 147 - -
Alju03g2189 256 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 71 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2189 Alju-ChrAlju03 49002958 49004112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2189 1 253 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 42.205 3.02e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju03g2189 HLH 2e-11 No_clan