Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2188 ATGTTGGCTTTATCGCCTTCTCTGTTCGCACCCATTGAGTGGACCTTGGAGGAACCCACAAGTCATAATGATCCCAACTTGTTTTACAAAGACGGAGCTACTCCTCAGTTTAGTTGCTCGCCGCCGCCAGGTGATGAGGTTGAGGTCGAGGAGGCTCAAAGATCTCCGCCAATATCCCTCGTTGTAGGCGGCGAAACTACCATGGTCAAAAAGCTTAATCACAATGCTAGTGAACGCGATCGTCGCAAGAAGATCAATAGCTTGTATTCCTCACTGCGTTCTATGCTTCCTTTGGCGGATCAAACGAAAAAGTTGAGTATTCCGGCAACAATTTCACGAATTCTAAAGTACATACCGCAGTTACAGCAGCAAGTGGAAATGCTTATCAAGAAGAAGGAGGAGCTTTTGTTGAGAACCTCTCAGCAAGGAGATGCCTCAGCCAATAAAGAATGTCGAAGGAAAATGGCTCATCACTACGCTGCCACTGCTTGTGTGGTTTCAATAAGCAGGCTCACTGATAACGAAGCTGTTGTTCAGATTTCCTCGGACAAGCTCCACAAAACTCCTTTTTCAGAGATATTGCTGTGTTTAGAAAAGGAAGGGCTTTTACTGCTAAATGCTTCCACCTTTGACACCTTTGGACATCGGGTCTTCTTTAACTTGCATTTTCAGATGGATGAAACTTGGGGAATAGAGCCAGAAATTCTAAGTGAGAAGATTTTGTCAATATATGAGAAGGAGGAAGGGAATTTTCGATGTTTCTAA 765 0.4418 MLALSPSLFAPIEWTLEEPTSHNDPNLFYKDGATPQFSCSPPPGDEVEVEEAQRSPPISLVVGGETTMVKKLNHNASERDRRKKINSLYSSLRSMLPLADQTKKLSIPATISRILKYIPQLQQQVEMLIKKKEELLLRTSQQGDASANKECRRKMAHHYAATACVVSISRLTDNEAVVQISSDKLHKTPFSEILLCLEKEGLLLLNASTFDTFGHRVFFNLHFQMDETWGIEPEILSEKILSIYEKEEGNFRCF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2188 254 Gene3D - 64 156 IPR036638 GO:0046983
Alju03g2188 254 FunFam Transcription factor ORG2 65 158 - -
Alju03g2188 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 121 IPR011598 GO:0046983
Alju03g2188 254 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 55 241 - -
Alju03g2188 254 Coils Coil 118 138 - -
Alju03g2188 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 139 IPR036638 GO:0046983
Alju03g2188 254 SMART finulus 75 127 IPR011598 GO:0046983
Alju03g2188 254 CDD bHLH_AtORG2_like 70 142 - -
Alju03g2188 254 Pfam Helix-loop-helix DNA-binding domain 70 122 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2188 Alju-ChrAlju03 48999405 49000643 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2188 1 251 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 43.511 5.00e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju03g2188 HLH 5.5e-12 No_clan