Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Alju03g2164 | ATGGAAGATGATGAGTTCATCGACCCAACCCAACCTTCTCAAGGTCTTTCGTCGGAAAGATACCTGCTCGGCTTCGTCTGCGCCAACATCGTTGGGATTAAACACTACTCTGGTACCATCAGTGGCCGTGAAATGGTTGGTCTGGTCCGTGAACCTCTCAACCCCTTCGATGAGAACGCCATTAAGGTCCTCAACACTCGAGCAAATCAGGTTGGGCATATTGAGCGAGCTGTCGCTGCCGTACTGTCTCCCTTGATGGACTCCGAACTTATCATTGTGGAAGGCATTGTGCCCAAAACGTACTCTGGTAACAAATTCAAGATTCCTTGTCAAATTCATATATTTGCGACGATTGAGAATTTTCCAACCGTGAAGGATGTGATTTCAGACAGTGGGTTAGCTTTAATTTTAGTGTCTGATGCAGCGTCTACGTTGTCAGAGTCTATGGCTGTGAAAGATAAGAAGGCTAAGAATGAGTTTAAGACTGTAGATGAGATTTTTAAGTTGGTTGATGAGAATATTAGCAAAAGGGGTGCATTGGAAGCTTTGGAGCCTCCTCGAAGTGTCATCAAGTCTGATCTTTTCCTACATCAAAAGGAAGGCTTGGGGTGGTTAGTTCATAGAGAGAATTCTGATGAATTGCCCCCATTTTGGGAAGAGCAAGATGGAGCCTTTGTGAATATTTTGACTAATTATCACACGGACACAAGGCCAGAGCCTTTGCGAGGTGGTATTCTAGCTGATGATATGGGATTAGGCAAGACCTTAACTTTGCTTTCTTTGATTGCTCTTGATAAAGATTCTATTGCTCTAAATATGGAAGAAGGGAAGCATGATGAAATGGGGGAGCTTGATGACTTCGCTATCTCAAGTGGTAAGAAGGGTAAAAGGAGAGGAACAAATAAACAGCCCACTGGATCAGCAAAAAGACGCAAGACTGAGAGTACTTCTTCAAGGGGCCATGGGAATGGAAAATCTGTTGCTGTAGATTGCACACCTTCAACGGGCATGGATATAAAGACTACATTGGTTGTGTGCCCCGCTTCTGTAATTTCAACATGGATAACACAGTTAGAAGAACATACTAAACCAGGCACATTGAAGACTTACATGTATTATGGTGATAAAAGGACCGACAATGCTGTAGAACTTAAGATGTACGATTTAGTTTTAACCACATACACCACTTTAGCTACTGAAGAATCTTCTTCAGACTCACCCATAAATAAAATACAGTGGTGGAGGGTCATTTTGGATGAAGCACATGTAATAAAAAATGTGAATGCTAAACAAAGTCAAGCTATCATGAAAATTGTAGCTAAGCGGAGGTGGGCTGTTACAGGGACACCAATTCAAAATGGTTTATTTGATTTATTTTCTCTCATGGCATTTCTACGCTTTCAACCATTTTCAACAAAGAGTTATTGGCAGAGCTTAGTGCAACGTCCTCTTGCAGAAAGAAACACAAACGGACTCTTACGTCTTCAGGTTTTGATGGCAACAATTTCGTTGCGAAGAACAAAAGATAAAGCATTGGTAGGATTGCCTCCAAAAACTGTAGAGACTTGTTTTGTTGAACTTCTTGAGGAAGAACGGAAACTGTATGATCAGATAGAATCGAGAGCACAGGACATAGTGGCAGGTTATATAAATGATGGAAGCTTAACGCGCAACTATTCAACCGTACTTGGTATAATTTTACGGCTTCGCCAAATTTGTACTGATATGGCATTGTGCCCTTCAGATCTAAAATCGTTGCTTCCTTCTAATAACATTGAAGATGTTTCCAATAACCCGGAATTGCTGCAAAAGTTGGTAGAGGTGCTGCAAGATGGTGAAGATTTTGACTGTCCGATATGTATTTCTCCACCAACTGACATTGTGATTACATGCTGTGCTCACATATACTGCCAAGCTTGTATTCTGAAAACCCTGCAGCGGAGCAAAGCTGGTTGTCCCCTTTGTCGTTACCCCCTTAAAGAATCTGATTTGTTCTCCGCCCCACCTCATGCTTCTGGTGCTGATGCTTATGGACTCTCCTCAGACAAAACCAACTTATCCTCTAAGGTGTCTGCTCTGCTGAAACTCCTTGTTGCCTCAAGGGATCAACATCCAGCTACAAAATCAGTTGTGTTTTCTCAGTTTCGTAAGATGCTGATTTTACTGGAACAGCCTCTGAAAGCAGCTGGTTTCAAGACATTGCGCCTTGATGGGACCATGAATGCTAAACAAAGGGGCCGGGTTATGGAAGAATTTGCAGCTGGAGGAACAGAGGAGCCCATGATTCTACTGGCAAGCCTCAAGGCTTCAGGCACAGGTATAAATCTGACAGCCGCCTCCAGAGTATACTTATTGGAGCCATGGTGGAACCCAGGAGTGGAGGAACAAGCAATGGACCGTGTCCACCGCATCGGACAGAAAGAGGAGGTGAAGATTGTAAGATTGATTGCTAAAAACAGCATTGAAGAGAGGGTATTGGAGTTGCAAGAGAAGAAGAAGCAGCTTGCAAAGGAAGCGTTTGGAAAGAGGAGTGCAAAGGGTAGCAGGGAAGTTGGAGGGGATGATTTCCGAATGCTCTTGTCCTTGTGA | 2589 | 0.4322 | MEDDEFIDPTQPSQGLSSERYLLGFVCANIVGIKHYSGTISGREMVGLVREPLNPFDENAIKVLNTRANQVGHIERAVAAVLSPLMDSELIIVEGIVPKTYSGNKFKIPCQIHIFATIENFPTVKDVISDSGLALILVSDAASTLSESMAVKDKKAKNEFKTVDEIFKLVDENISKRGALEALEPPRSVIKSDLFLHQKEGLGWLVHRENSDELPPFWEEQDGAFVNILTNYHTDTRPEPLRGGILADDMGLGKTLTLLSLIALDKDSIALNMEEGKHDEMGELDDFAISSGKKGKRRGTNKQPTGSAKRRKTESTSSRGHGNGKSVAVDCTPSTGMDIKTTLVVCPASVISTWITQLEEHTKPGTLKTYMYYGDKRTDNAVELKMYDLVLTTYTTLATEESSSDSPINKIQWWRVILDEAHVIKNVNAKQSQAIMKIVAKRRWAVTGTPIQNGLFDLFSLMAFLRFQPFSTKSYWQSLVQRPLAERNTNGLLRLQVLMATISLRRTKDKALVGLPPKTVETCFVELLEEERKLYDQIESRAQDIVAGYINDGSLTRNYSTVLGIILRLRQICTDMALCPSDLKSLLPSNNIEDVSNNPELLQKLVEVLQDGEDFDCPICISPPTDIVITCCAHIYCQACILKTLQRSKAGCPLCRYPLKESDLFSAPPHASGADAYGLSSDKTNLSSKVSALLKLLVASRDQHPATKSVVFSQFRKMLILLEQPLKAAGFKTLRLDGTMNAKQRGRVMEEFAAGGTEEPMILLASLKASGTGINLTAASRVYLLEPWWNPGVEEQAMDRVHRIGQKEEVKIVRLIAKNSIEERVLELQEKKKQLAKEAFGKRSAKGSREVGGDDFRMLLSL | 862 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Alju03g2164 | 862 | SMART | ring_2 | 617 | 655 | IPR001841 | - | |
Alju03g2164 | 862 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 507 | 845 | IPR027417 | - | |
Alju03g2164 | 862 | Pfam | Zinc finger, C3HC4 type (RING finger) | 614 | 660 | - | - | |
Alju03g2164 | 862 | SMART | HIRAN_2 | 23 | 118 | IPR014905 | GO:0003676|GO:0008270|GO:0016818 | |
Alju03g2164 | 862 | Gene3D | - | 16 | 135 | - | - | |
Alju03g2164 | 862 | CDD | SF2_C_SNF | 686 | 816 | - | - | |
Alju03g2164 | 862 | ProSiteProfiles | Zinc finger RING-type profile. | 617 | 656 | IPR001841 | - | |
Alju03g2164 | 862 | SUPERFAMILY | RING/U-box | 613 | 665 | - | - | |
Alju03g2164 | 862 | MobiDBLite | consensus disorder prediction | 289 | 331 | - | - | |
Alju03g2164 | 862 | Pfam | HIRAN domain | 24 | 102 | IPR014905 | GO:0003676|GO:0008270|GO:0016818 | |
Alju03g2164 | 862 | Pfam | SNF2-related domain | 197 | 576 | IPR000330 | GO:0005524|GO:0140658 | |
Alju03g2164 | 862 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 176 | 497 | IPR027417 | - | |
Alju03g2164 | 862 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 235 | 468 | IPR014001 | - | |
Alju03g2164 | 862 | SMART | helicmild6 | 720 | 805 | IPR001650 | - | |
Alju03g2164 | 862 | ProSitePatterns | Zinc finger RING-type signature. | 632 | 641 | IPR017907 | - | |
Alju03g2164 | 862 | PANTHER | TRANSCRIPTION TERMINATION FACTOR 2-RELATED | 150 | 858 | - | - | |
Alju03g2164 | 862 | CDD | RING-HC_HLTF | 612 | 664 | - | - | |
Alju03g2164 | 862 | Gene3D | - | 320 | 507 | IPR038718 | - | |
Alju03g2164 | 862 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 692 | 852 | IPR001650 | - | |
Alju03g2164 | 862 | SMART | ultradead3 | 190 | 480 | IPR014001 | - | |
Alju03g2164 | 862 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 598 | 683 | IPR013083 | - | |
Alju03g2164 | 862 | Gene3D | - | 168 | 280 | IPR038718 | - | |
Alju03g2164 | 862 | Pfam | Helicase conserved C-terminal domain | 689 | 805 | IPR001650 | - | |
Alju03g2164 | 862 | Coils | Coil | 818 | 838 | - | - | |
Alju03g2164 | 862 | Gene3D | - | 516 | 861 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Alju03g2164 | Alju-ChrAlju03 | 48821461 | 48825390 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Alju03g2164 | 3 | 862 | RAD5 or RAD16-like Gene Family | AT5G05130 | 62.673 | 0.0 | 1082 |