Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2164 ATGGAAGATGATGAGTTCATCGACCCAACCCAACCTTCTCAAGGTCTTTCGTCGGAAAGATACCTGCTCGGCTTCGTCTGCGCCAACATCGTTGGGATTAAACACTACTCTGGTACCATCAGTGGCCGTGAAATGGTTGGTCTGGTCCGTGAACCTCTCAACCCCTTCGATGAGAACGCCATTAAGGTCCTCAACACTCGAGCAAATCAGGTTGGGCATATTGAGCGAGCTGTCGCTGCCGTACTGTCTCCCTTGATGGACTCCGAACTTATCATTGTGGAAGGCATTGTGCCCAAAACGTACTCTGGTAACAAATTCAAGATTCCTTGTCAAATTCATATATTTGCGACGATTGAGAATTTTCCAACCGTGAAGGATGTGATTTCAGACAGTGGGTTAGCTTTAATTTTAGTGTCTGATGCAGCGTCTACGTTGTCAGAGTCTATGGCTGTGAAAGATAAGAAGGCTAAGAATGAGTTTAAGACTGTAGATGAGATTTTTAAGTTGGTTGATGAGAATATTAGCAAAAGGGGTGCATTGGAAGCTTTGGAGCCTCCTCGAAGTGTCATCAAGTCTGATCTTTTCCTACATCAAAAGGAAGGCTTGGGGTGGTTAGTTCATAGAGAGAATTCTGATGAATTGCCCCCATTTTGGGAAGAGCAAGATGGAGCCTTTGTGAATATTTTGACTAATTATCACACGGACACAAGGCCAGAGCCTTTGCGAGGTGGTATTCTAGCTGATGATATGGGATTAGGCAAGACCTTAACTTTGCTTTCTTTGATTGCTCTTGATAAAGATTCTATTGCTCTAAATATGGAAGAAGGGAAGCATGATGAAATGGGGGAGCTTGATGACTTCGCTATCTCAAGTGGTAAGAAGGGTAAAAGGAGAGGAACAAATAAACAGCCCACTGGATCAGCAAAAAGACGCAAGACTGAGAGTACTTCTTCAAGGGGCCATGGGAATGGAAAATCTGTTGCTGTAGATTGCACACCTTCAACGGGCATGGATATAAAGACTACATTGGTTGTGTGCCCCGCTTCTGTAATTTCAACATGGATAACACAGTTAGAAGAACATACTAAACCAGGCACATTGAAGACTTACATGTATTATGGTGATAAAAGGACCGACAATGCTGTAGAACTTAAGATGTACGATTTAGTTTTAACCACATACACCACTTTAGCTACTGAAGAATCTTCTTCAGACTCACCCATAAATAAAATACAGTGGTGGAGGGTCATTTTGGATGAAGCACATGTAATAAAAAATGTGAATGCTAAACAAAGTCAAGCTATCATGAAAATTGTAGCTAAGCGGAGGTGGGCTGTTACAGGGACACCAATTCAAAATGGTTTATTTGATTTATTTTCTCTCATGGCATTTCTACGCTTTCAACCATTTTCAACAAAGAGTTATTGGCAGAGCTTAGTGCAACGTCCTCTTGCAGAAAGAAACACAAACGGACTCTTACGTCTTCAGGTTTTGATGGCAACAATTTCGTTGCGAAGAACAAAAGATAAAGCATTGGTAGGATTGCCTCCAAAAACTGTAGAGACTTGTTTTGTTGAACTTCTTGAGGAAGAACGGAAACTGTATGATCAGATAGAATCGAGAGCACAGGACATAGTGGCAGGTTATATAAATGATGGAAGCTTAACGCGCAACTATTCAACCGTACTTGGTATAATTTTACGGCTTCGCCAAATTTGTACTGATATGGCATTGTGCCCTTCAGATCTAAAATCGTTGCTTCCTTCTAATAACATTGAAGATGTTTCCAATAACCCGGAATTGCTGCAAAAGTTGGTAGAGGTGCTGCAAGATGGTGAAGATTTTGACTGTCCGATATGTATTTCTCCACCAACTGACATTGTGATTACATGCTGTGCTCACATATACTGCCAAGCTTGTATTCTGAAAACCCTGCAGCGGAGCAAAGCTGGTTGTCCCCTTTGTCGTTACCCCCTTAAAGAATCTGATTTGTTCTCCGCCCCACCTCATGCTTCTGGTGCTGATGCTTATGGACTCTCCTCAGACAAAACCAACTTATCCTCTAAGGTGTCTGCTCTGCTGAAACTCCTTGTTGCCTCAAGGGATCAACATCCAGCTACAAAATCAGTTGTGTTTTCTCAGTTTCGTAAGATGCTGATTTTACTGGAACAGCCTCTGAAAGCAGCTGGTTTCAAGACATTGCGCCTTGATGGGACCATGAATGCTAAACAAAGGGGCCGGGTTATGGAAGAATTTGCAGCTGGAGGAACAGAGGAGCCCATGATTCTACTGGCAAGCCTCAAGGCTTCAGGCACAGGTATAAATCTGACAGCCGCCTCCAGAGTATACTTATTGGAGCCATGGTGGAACCCAGGAGTGGAGGAACAAGCAATGGACCGTGTCCACCGCATCGGACAGAAAGAGGAGGTGAAGATTGTAAGATTGATTGCTAAAAACAGCATTGAAGAGAGGGTATTGGAGTTGCAAGAGAAGAAGAAGCAGCTTGCAAAGGAAGCGTTTGGAAAGAGGAGTGCAAAGGGTAGCAGGGAAGTTGGAGGGGATGATTTCCGAATGCTCTTGTCCTTGTGA 2589 0.4322 MEDDEFIDPTQPSQGLSSERYLLGFVCANIVGIKHYSGTISGREMVGLVREPLNPFDENAIKVLNTRANQVGHIERAVAAVLSPLMDSELIIVEGIVPKTYSGNKFKIPCQIHIFATIENFPTVKDVISDSGLALILVSDAASTLSESMAVKDKKAKNEFKTVDEIFKLVDENISKRGALEALEPPRSVIKSDLFLHQKEGLGWLVHRENSDELPPFWEEQDGAFVNILTNYHTDTRPEPLRGGILADDMGLGKTLTLLSLIALDKDSIALNMEEGKHDEMGELDDFAISSGKKGKRRGTNKQPTGSAKRRKTESTSSRGHGNGKSVAVDCTPSTGMDIKTTLVVCPASVISTWITQLEEHTKPGTLKTYMYYGDKRTDNAVELKMYDLVLTTYTTLATEESSSDSPINKIQWWRVILDEAHVIKNVNAKQSQAIMKIVAKRRWAVTGTPIQNGLFDLFSLMAFLRFQPFSTKSYWQSLVQRPLAERNTNGLLRLQVLMATISLRRTKDKALVGLPPKTVETCFVELLEEERKLYDQIESRAQDIVAGYINDGSLTRNYSTVLGIILRLRQICTDMALCPSDLKSLLPSNNIEDVSNNPELLQKLVEVLQDGEDFDCPICISPPTDIVITCCAHIYCQACILKTLQRSKAGCPLCRYPLKESDLFSAPPHASGADAYGLSSDKTNLSSKVSALLKLLVASRDQHPATKSVVFSQFRKMLILLEQPLKAAGFKTLRLDGTMNAKQRGRVMEEFAAGGTEEPMILLASLKASGTGINLTAASRVYLLEPWWNPGVEEQAMDRVHRIGQKEEVKIVRLIAKNSIEERVLELQEKKKQLAKEAFGKRSAKGSREVGGDDFRMLLSL 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2164 862 SMART ring_2 617 655 IPR001841 -
Alju03g2164 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 507 845 IPR027417 -
Alju03g2164 862 Pfam Zinc finger, C3HC4 type (RING finger) 614 660 - -
Alju03g2164 862 SMART HIRAN_2 23 118 IPR014905 GO:0003676|GO:0008270|GO:0016818
Alju03g2164 862 Gene3D - 16 135 - -
Alju03g2164 862 CDD SF2_C_SNF 686 816 - -
Alju03g2164 862 ProSiteProfiles Zinc finger RING-type profile. 617 656 IPR001841 -
Alju03g2164 862 SUPERFAMILY RING/U-box 613 665 - -
Alju03g2164 862 MobiDBLite consensus disorder prediction 289 331 - -
Alju03g2164 862 Pfam HIRAN domain 24 102 IPR014905 GO:0003676|GO:0008270|GO:0016818
Alju03g2164 862 Pfam SNF2-related domain 197 576 IPR000330 GO:0005524|GO:0140658
Alju03g2164 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 497 IPR027417 -
Alju03g2164 862 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 235 468 IPR014001 -
Alju03g2164 862 SMART helicmild6 720 805 IPR001650 -
Alju03g2164 862 ProSitePatterns Zinc finger RING-type signature. 632 641 IPR017907 -
Alju03g2164 862 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 150 858 - -
Alju03g2164 862 CDD RING-HC_HLTF 612 664 - -
Alju03g2164 862 Gene3D - 320 507 IPR038718 -
Alju03g2164 862 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 692 852 IPR001650 -
Alju03g2164 862 SMART ultradead3 190 480 IPR014001 -
Alju03g2164 862 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 598 683 IPR013083 -
Alju03g2164 862 Gene3D - 168 280 IPR038718 -
Alju03g2164 862 Pfam Helicase conserved C-terminal domain 689 805 IPR001650 -
Alju03g2164 862 Coils Coil 818 838 - -
Alju03g2164 862 Gene3D - 516 861 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2164 Alju-ChrAlju03 48821461 48825390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2164 3 862 RAD5 or RAD16-like Gene Family AT5G05130 62.673 0.0 1082
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju03g2164 SNF2_N 3.7e-78 CL0023