Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2161 ATGAAGTCTGGCTCACTAGAGTACTGGAGGAATTACTTTCGAACTGCAAATTCTGATATATTCGATATAATTCACCACGCCATCATGGTGGCGGTTTCCGATTGTCCGAAGGAATTTAGATTACGAAGAGACGGGATTGCGGAACGTTTGTTTTCTAGTAGATGGTCTCGTTGTGTGGGGTGTGATCGATTAGAGTTGGCGGTTTCTGGTGATGATGAGGAAGATGGAGGTTGTAAGAGTGGTTTTGATCGAGAAGTTACTGAATTAGAAGCAGGAGCTAGTAAAGAGAGCAAGGTCAATAGTAGCAGAGACGATCACGAAGAGATGAACAGGAACCAAGTGAGTAATTTTAGTTTTGGAGAAGCTGAGGCATTGACTGATGAGATTGAAGAAGAGTCTCTGATGGTTGGAGAGGTTTTGAGGATCAAAGAGATTCTTCATAACAGCAAGGAAGAGCCCGATTCAGTGTTGTTTGAGTCATTGAGGAGGCTCCAGCTGCTGGCACTGAGCGTGGATCTTCTTAAGGGAACTGAGATTGGAAAGGCTGTCAATCCTCTCAGGAAGCATGGATCAAAGGAGATCCGTCAACTTGCACGAACTCTTATCGATGGTTGGAAAGCAATGGTAGATGAATGGGTCAAGTCCACAGCAGCTATAGCAACTTCAGCAGAAGGCACCCCAGATTCAGTGAATCCATCAGTCGTTGATGAAGAGGAAGGGCTTCCTTCACCTCCTCTTGATGAAATGGCTTTTCTTGCAGCTCCACCTGGTCCAATGGAATTCTCACAGTTCTTTGATGGCGTGGATGATCAAGGAAATTTTCAACAAAGTGGGGAATTCATCAAGACTCACAAACACATCAGAAATCCTACTATGGACAGTCAAAACGTAGTAAAGAGAAAACCACAGGCTTCCAGTGAGGCCAAGGAGAGTAAATGTCATCAAACGAAGAAGAATGAGGTTGCTATGAGACAGAGTAAACCGGTCTGCACTGATTCTGGCCTTGGGAGGCCACCAAAATCCAGCTTGCAGCAAAAAAACAACACAGGACGAAAAATGCAGCAAAAACAAGAGACAAGTGCTATCCCAAAGAGGCCTCTTGTTGCTCAGCAAGATAAATTCAAGTGTTCAGATGATGCTTCAGTCCAAGCAAAACTAGAAGCCACTAAGAGGAAACTTCAGGAGTCTTATCAACAAGCTGAAAATGCCAAGAAGCAGCGAACAATACAGGTTATGGAGTTGCATGATCTTCCAAGGCAAGGTAATGGCCACCGAAATCCACCCTTCAAGCCTGGGAAGGGTCAGGGACGAAGATAG 1317 0.448 MKSGSLEYWRNYFRTANSDIFDIIHHAIMVAVSDCPKEFRLRRDGIAERLFSSRWSRCVGCDRLELAVSGDDEEDGGCKSGFDREVTELEAGASKESKVNSSRDDHEEMNRNQVSNFSFGEAEALTDEIEEESLMVGEVLRIKEILHNSKEEPDSVLFESLRRLQLLALSVDLLKGTEIGKAVNPLRKHGSKEIRQLARTLIDGWKAMVDEWVKSTAAIATSAEGTPDSVNPSVVDEEEGLPSPPLDEMAFLAAPPGPMEFSQFFDGVDDQGNFQQSGEFIKTHKHIRNPTMDSQNVVKRKPQASSEAKESKCHQTKKNEVAMRQSKPVCTDSGLGRPPKSSLQQKNNTGRKMQQKQETSAIPKRPLVAQQDKFKCSDDASVQAKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPRQGNGHRNPPFKPGKGQGRR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2161 438 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 430 IPR044805 -
Alju03g2161 438 SMART TFS2_5 136 211 IPR003617 GO:0005634
Alju03g2161 438 MobiDBLite consensus disorder prediction 413 438 - -
Alju03g2161 438 MobiDBLite consensus disorder prediction 303 321 - -
Alju03g2161 438 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 128 222 IPR035441 -
Alju03g2161 438 MobiDBLite consensus disorder prediction 337 361 - -
Alju03g2161 438 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 133 219 IPR035441 -
Alju03g2161 438 Pfam TFIIS helical bundle-like domain 161 209 IPR017923 -
Alju03g2161 438 MobiDBLite consensus disorder prediction 286 375 - -
Alju03g2161 438 Coils Coil 383 410 - -
Alju03g2161 438 ProSiteProfiles TFIIS N-terminal domain profile. 137 212 IPR017923 -
Alju03g2161 438 CDD TFIIS_I 138 210 - -
Alju03g2161 438 MobiDBLite consensus disorder prediction 90 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2161 Alju-ChrAlju03 48804269 48807144 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Alju03g2161 Med26 1.2e-11 No_clan