Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2119 ATGCAAGAAATATTTTCTTTCTTTTTAACAGAATCATCCCACCCAATTAGGCGACTCCAAATTTCAAACCCTAGGGTCTTTGGCTGCTCCTCAGTCAGTATCCATCCAACAATGGGGAGGAAGCGAAAGCTCACGCCTAAACCTGCTGAATCCGTTGAACCCCCATTGAAGCAACAGCATCAACAGCAGCAACAGCAGCAATATGGGCCAGAAGCGGACCAAACTGTTGAAGAACAAGATAATGGAGCCGATTACGAAGAAGTTGAAGTGGAAGAAGAGGAGGAGGTAGAAGAAGAGGAAGAGGAGGAACTAGAGCCTGGAGAAGGATCAGGACATGATAACGCATATCCCGATCACACCCAAAACGCGAATGATCAGGCATCTAAGGCCCATTCATCATCAGCGGCTGCAACATCAGTAACCGCTCAACATGGAAAGGAGGAGGAGGACGACGAGCCGATTCATAAGCTTCTGGAACCATTCAGCAAGGAACAAATTTTAAATTTGCTGTGCGAAGCGGCGAATAAACATCGCGATGTAGCGGATCGGGTTCGAAAGGTGGCTGATGAGGACCCTGTTCATCGAAAAATCTTCGTACATGGCCTTGGATGGGACACAAACGCTGATACCCTAATCAACGTTTTCAAGCAGTACGGTGAAATTGAAGATTGCAAGGCGGTATGTGACAAGGTATCCGGTAAATCCAAGGGCTATGGCTTTATCCTCTTCAAATCGCGTCGTGGAGCTCGCAATGCGCTGAAGCAGCCGCAGAAGAAGATCGGGAACCGAATGACGGCCTGCCAGCTGGCTTCGATTGGCCCGGTTCAACAGCCAGCCCCGGCGCAGTCAACCCCAGCGCAGCAAGTATCAGAGTATACCCTAAGGAAGATTTACGTCAGCAATGTTGGGGCCGATTTGGATCCTCAGAAATTGCATGTGTTTTTTTCGAAGTTTGGGGAGATCGAAGATGGACCATTAGGGCTTGATAAGCTGACTGGGAAACCAAAAGGCTTCTGCTTGTTTGTGTACAAGAGCGCTGAGAGTGCTAGAAAGGCGCTGGAAGAGCCTCACAAGGAATTTGAGGGCCATATTTTGCACTGTCAGAAGGCAATAGATGGTCCAAAGCCGGGAAAGCCTCAATATCAGCAACATCAGAATCCTCAGAGAACCCAATTCCAGAGAAATGAGACCGCTTCATATGTTGGTGGGGCTGCTACCGGACAAGGGCACCTCATGGCGCCAGCGGGACCTGGTATTGGATTTAACCAGCAGGCTGCTGCTGCACAGACACTAAACCCAGCTCTTGGGCAGGCACTGACAGCACTTCTTGCAACTCAAGGGGCTGGCTTGGGGCTGACTAATTTATTGGGAACCCTAGGATCAGGTGCTACTGTAAACCCGTCTGTTCCTTCTGCAGGCCATGGAATTCAGGGTGGTTACAGTAACCAACCAAATATAAGCTCGGGTATCATTGGTGGATATGGAAATCAAAGTGGCTTACAGGGGACTTATCCAAGCCAGCAGGTGGGACAAAGTGGTTCTGGAAGAGTGCAGCATGGTGTTGGCCAATATGGTGGTGTTGCCCCTTACATGGGGCACTAG 1602 0.4956 MQEIFSFFLTESSHPIRRLQISNPRVFGCSSVSIHPTMGRKRKLTPKPAESVEPPLKQQHQQQQQQQYGPEADQTVEEQDNGADYEEVEVEEEEEVEEEEEEELEPGEGSGHDNAYPDHTQNANDQASKAHSSSAAATSVTAQHGKEEEDDEPIHKLLEPFSKEQILNLLCEAANKHRDVADRVRKVADEDPVHRKIFVHGLGWDTNADTLINVFKQYGEIEDCKAVCDKVSGKSKGYGFILFKSRRGARNALKQPQKKIGNRMTACQLASIGPVQQPAPAQSTPAQQVSEYTLRKIYVSNVGADLDPQKLHVFFSKFGEIEDGPLGLDKLTGKPKGFCLFVYKSAESARKALEEPHKEFEGHILHCQKAIDGPKPGKPQYQQHQNPQRTQFQRNETASYVGGAATGQGHLMAPAGPGIGFNQQAAAAQTLNPALGQALTALLATQGAGLGLTNLLGTLGSGATVNPSVPSAGHGIQGGYSNQPNISSGIIGGYGNQSGLQGTYPSQQVGQSGSGRVQHGVGQYGGVAPYMGH 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2119 533 Coils Coil 82 105 - -
Alju03g2119 533 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 371 IPR000504 GO:0003723
Alju03g2119 533 FunFam UBP1-associated protein 2A 188 272 - -
Alju03g2119 533 SMART rrm1_1 196 268 IPR000504 GO:0003723
Alju03g2119 533 SMART rrm1_1 296 368 IPR000504 GO:0003723
Alju03g2119 533 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 272 IPR000504 GO:0003723
Alju03g2119 533 Gene3D - 277 409 IPR012677 -
Alju03g2119 533 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 365 IPR000504 GO:0003723
Alju03g2119 533 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 263 IPR000504 GO:0003723
Alju03g2119 533 SUPERFAMILY RNA-binding domain, RBD 277 392 IPR035979 GO:0003676
Alju03g2119 533 MobiDBLite consensus disorder prediction 55 74 - -
Alju03g2119 533 SUPERFAMILY RNA-binding domain, RBD 187 280 IPR035979 GO:0003676
Alju03g2119 533 Gene3D - 112 276 IPR012677 -
Alju03g2119 533 MobiDBLite consensus disorder prediction 77 107 - -
Alju03g2119 533 MobiDBLite consensus disorder prediction 372 392 - -
Alju03g2119 533 MobiDBLite consensus disorder prediction 29 152 - -
Alju03g2119 533 MobiDBLite consensus disorder prediction 115 141 - -
Alju03g2119 533 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 70 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2119 Alju-ChrAlju03 48513537 48515238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2119 295 412 C2H2 Transcription Factor Family AT2G19380 31.405 3.81e-11 63.9