Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2109 ATGAAAAATGAAAAGACAATGGATTTGGTGGTAGCTGTATTGAAACCCCTTGATCGGCTTGTATGCTCGCGCTATCATGTGAAAGCTCTATATTGTAAGTCTGTCTGGCCTGAAAACAAAAGTTGTGAGACAGTAGTGGAGATTATTGAAGCCATGGGAAGACCTCCTTGCTGTGACAAAGTTGGGATCAAGAAGGGACCATGGACTCCTGAGGAGGATATCATCCTTGTTTCTTACATCCAAGAGCATGGCCCTGGAAATTGGAGATCAGTTCCTACTAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTGAGATGGACTAACTACCTCAGGCCAGGAATCAAGAGAGGGAACTTCACACCTCATGAGGAAGGAATGATAATTCATTTGCAGGCTCTTCTGGGAAACAAATGGGCAGCCATAGCTTCGTACCTACCACAAAGAACAGATAATGATATAAAGAATTATTGGAACACACATCTAAAGAAGAAGCTGAAGAAATTTCAAGCAGGCTTGGACCCCCACCTTGTGTCACCAGACTCAACCACCTCTGCTCAGCTTGTATCTAAGAGCTTTCATGACAGAACAAATTTAGATATGAGTAACAACAACACTTCATCTCTTAGGCTTAGTCAGTCCCAGTCCCAGTCTCAATCTCAGTCTCAGTCCTCATCCTCCACCACCTACGCCTCAAGCACTGAGAACATCTCACGCCTCTTACAAGGTTGGATGAGATCATCCCCAAAGCCAGACAACAACAACAACAACAGTAATCTTCTCCAAGTAACCAAAGACAAGGAGCTTCATCAAAACAACAACAACAACGTTAACAGCTTTGAAAACAGTAATAAGCCAATGATGGTGAAGTCTGCATCAGTACCTGCTGCTTTAAATTTTGTGTCCTTTCATCATCATCAAGCAAAAGATGAGCAAGAGGGTGGTGGAGATATGGTGTCCCATAATGAAGAGTTTGATTCTATTCTGTCGTTTGAGAACCTAAACAATGCTTCTGCTTGGGACAAGTCAACTTGTGATTCTGTTCTTGACAAGAGGTCTGATGAAGCTGCCGCAGCTGAGAAGGTTCATGATAATAATAAGCAGAATAGTGCTCCTCCTTTGTCGTTTCTTGAGAAGTGGCTGTTTGAGGAAAATGTAGGCCATGAGGAGATGATGGAACTATCCCCTATGTTCTAA 1200 0.4308 MKNEKTMDLVVAVLKPLDRLVCSRYHVKALYCKSVWPENKSCETVVEIIEAMGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAGLDPHLVSPDSTTSAQLVSKSFHDRTNLDMSNNNTSSLRLSQSQSQSQSQSQSSSSTTYASSTENISRLLQGWMRSSPKPDNNNNNSNLLQVTKDKELHQNNNNNVNSFENSNKPMMVKSASVPAALNFVSFHHHQAKDEQEGGGDMVSHNEEFDSILSFENLNNASAWDKSTCDSVLDKRSDEAAAAEKVHDNNKQNSAPPLSFLEKWLFEENVGHEEMMELSPMF 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2109 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 116 IPR017930 -
Alju03g2109 399 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 52 277 - -
Alju03g2109 399 Pfam Myb-like DNA-binding domain 65 112 IPR001005 -
Alju03g2109 399 Pfam Myb-like DNA-binding domain 118 163 IPR001005 -
Alju03g2109 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 167 IPR017930 -
Alju03g2109 399 MobiDBLite consensus disorder prediction 196 233 - -
Alju03g2109 399 ProSiteProfiles Myb-like domain profile. 60 112 IPR001005 -
Alju03g2109 399 CDD SANT 67 112 IPR001005 -
Alju03g2109 399 CDD SANT 120 163 IPR001005 -
Alju03g2109 399 SUPERFAMILY Homeodomain-like 62 159 IPR009057 -
Alju03g2109 399 SMART sant 117 165 IPR001005 -
Alju03g2109 399 SMART sant 64 114 IPR001005 -
Alju03g2109 399 Gene3D - 64 117 - -
Alju03g2109 399 FunFam MYB-related transcription factor 64 117 - -
Alju03g2109 399 FunFam Transcription factor MYB60 119 190 - -
Alju03g2109 399 Gene3D - 120 177 - -
Alju03g2109 399 ProSiteProfiles Myb-like domain profile. 113 163 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2109 Alju-ChrAlju03 48431331 48434159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2109 52 199 MYB Transcription Factor Family AT5G62470 76.510 9.90e-81 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju03g2109 Myb_DNA-binding 2.2e-15 CL0123