Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2098 ATGGCTAAAGGAGAGAGAGAATATGCGAGAAAGGACCCATTTGGGGTTGTCAAGTTCAGACCTTTCGGTTTCCTAACGTTTTCATCTCTCTTGTTCTGTGTTCCTTGGTTTTCTGTTTCCATGAGTATTTCACAAAACTTCGCCAATGGGGGTGGTGGTTTCAGTGGGGACGTCAATCTTTTACCCCCAGTTCCTTCTTATGTCTCCCCTCTTCTGGTTCGAACTCCTCCACTTTCACTGTCAAACTCTTTTGGTCAGACTGGTGGCGAGATTGGTTTTCAGATTCTGAGCCCTTCCTTTCCGTACCAGGAGAGCAGGGGAACAATGAGAGGCCACGGTGGAGCTGATGGACTTTCAGGTGTTCAGAACAAGAGCTTGCCTTTCAAACTTGGCGAGGAGGACATTGAAGCTAAGAGACCTTCTAGCGCGAGAAATGGACACACAAAGTTCTGTTCTCGAGGCCATTGGAGGCCAGCTGAAGATGCCAGACTCAGAGAGCTTGTAGCTCAGTACGGTCCTCAAAATTGGAACTTGATCGCCGACCATCTCCAAGGGAGATCAGGGAAAAGTTGCAGACTGAGGTGGTTCAATCAGCTGGATCCCAGAATTAACAGGAGGGCGTTCTCCGAGGAAGAAGAGGGGAGATTGTTGTCTGCTCACAGAATGTACGGGAACAAATGGGCTATGATCGCCAAACTGTTTCCTGGGAGGACAGATAATGCAGTGAAGAACCACTGGCACGTGGTAATGGCCAGGAAGCACAGAGAGCTATCAAGTGGTTGTAGGAGGAGGAGGTCTTCTTCTGAAATCTTCCGTCCAAAGGCTTTAAATTTGACACTCTCGAGTAATGCAGTGAGCGAATCCACCAACGCCAGCAACCTCATGGACGAATCTGCCTCATCCTCCACCGATCTCTCCCTCAGCCCCACATTTTTCCCAAGCTCGAGTCCTGGATCGCTGATGGGTCTTTCCTATTCCCATGAGATGAAGTTGATGGGTGGAGTGGAGCAATCAAATTCAGACTCAAACTCAGAGATATCAGTATCTGAGTCAGTGACCACAAACAGGACGAACATCTCAATTTATGGGGAAAGTGAGAACGTGGGTGATAACATTAACAAGCCATTCATTGATTTCCTTGGAGTAGGTGCTATGTGA 1158 0.4819 MAKGEREYARKDPFGVVKFRPFGFLTFSSLLFCVPWFSVSMSISQNFANGGGGFSGDVNLLPPVPSYVSPLLVRTPPLSLSNSFGQTGGEIGFQILSPSFPYQESRGTMRGHGGADGLSGVQNKSLPFKLGEEDIEAKRPSSARNGHTKFCSRGHWRPAEDARLRELVAQYGPQNWNLIADHLQGRSGKSCRLRWFNQLDPRINRRAFSEEEEGRLLSAHRMYGNKWAMIAKLFPGRTDNAVKNHWHVVMARKHRELSSGCRRRRSSSEIFRPKALNLTLSSNAVSESTNASNLMDESASSSTDLSLSPTFFPSSSPGSLMGLSYSHEMKLMGGVEQSNSDSNSEISVSESVTTNRTNISIYGESENVGDNINKPFIDFLGVGAM 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2098 385 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 148 203 IPR017930 -
Alju03g2098 385 SUPERFAMILY Homeodomain-like 153 246 IPR009057 -
Alju03g2098 385 CDD SANT 207 250 IPR001005 -
Alju03g2098 385 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 254 IPR017930 -
Alju03g2098 385 CDD SANT 156 197 IPR001005 -
Alju03g2098 385 Gene3D - 153 204 - -
Alju03g2098 385 SMART sant 152 201 IPR001005 -
Alju03g2098 385 SMART sant 204 252 IPR001005 -
Alju03g2098 385 ProSiteProfiles Myb-like domain profile. 200 250 IPR001005 -
Alju03g2098 385 ProSiteProfiles Myb-like domain profile. 153 199 IPR001005 -
Alju03g2098 385 FunFam MYB transcription factor 153 204 - -
Alju03g2098 385 Gene3D - 206 272 - -
Alju03g2098 385 PANTHER MYB PROTEIN-RELATED 153 303 - -
Alju03g2098 385 Pfam Myb-like DNA-binding domain 153 199 IPR001005 -
Alju03g2098 385 Pfam Myb-like DNA-binding domain 205 248 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2098 Alju-ChrAlju03 48363861 48365313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2098 152 385 MYB Transcription Factor Family AT1G69560 49.206 4.96e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju03g2098 Myb_DNA-binding 2.1e-15 CL0123