Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2084 ATGTTACAGCGCAAGGCCTTGCTTTGTTTCCCGCCACTCTGCCCTCCTTACAGACTCCCAAGGAGCTTCTCTCGCTCGTCAGTTTCTGTCCGAGCGAAGGTAGAGAAAAAGATCAAGATCATGTTGTGGGTAGACAAGTATCGCCCTAAAACCCTCGACCAAATTACTGTCCACGAAGAAGTCGCCCAAAATCTTAAGAAACTGGTGACGGAGCAGGATTGCCCGCATTTGCTATTCTATGGCCCGCCTGGTTCCGGCAAAAAAACCCTAATCATGGCTCTTCTCCGACAAATGTTTGGGAACGGTGCCGAGAAGGTGAAGGTGGAAAATAGGACATGGAAAGTGGATGCTGGAAGCAGATCTATTGATATAGAGCTGACAACATTAGCAAGTGCCAATCACATAGAAATGAGTCCCAGTGATGCAGGCTTTCAGGACAGATATGTTGTTCAAGAAATAATTAAAGAAATGGCTAAAAATAGACCAATTGATATCAAGGGGAAGAAAGGCTTCAAAGTACTACTGCTCAATGAGGTTGACAAACTCTCTAGAGAAGCCCAGCATTCTCTGCGCAGAACAATGGAAAAATACAGTGCTTATTGCAGGTTGATTCTATGTTGCAATAGTTCTTCAAGAGTTACAGAAGCTATTCGCTCTCGCTGTCTAAATGTGCGAATAAATGCACCAAGTGAAGAACAGATAGTTAGAGCATTGGAGTTCATTGGTAAGAAAGAAGATCTGCAACTTCCTTCTGGGTTTGGTGCTCGCATAGCAGAGAAATCAAATCGGAACCTAAGGCGGGCTATATTGTCTCTTGAAACTTGCGGTGTCCAACAGTATCCTTTCAGTAGCAAGCAAACAATACCACCAATGGATTGGGAGGAATATATTTATGAAATTGCGTCTGACATAATGAAGGAACAAAGCCCAAAAAGGTTGTTTCAAGTTCGAGGGAAGTTGTATGAGCTCTTAATCAACTGTATCCCTCCCGAGATCATCTTGAAGAGGCTTCTTTACGAACTGCTGAAGAAACTGGATGCAGAATTAAAGCTTGAGGTCTGCCATTGGGCGGCATATTATGAACATAGAATGCGTCTTGGACAGAAGGCCATCTTCCACCTGGAAGCGTTTGTGGCTAAATTCATGAGCGTTTATAAAGCCTTCCTAATTGCTACATTCGGCTGA 1185 0.4371 MLQRKALLCFPPLCPPYRLPRSFSRSSVSVRAKVEKKIKIMLWVDKYRPKTLDQITVHEEVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALLRQMFGNGAEKVKVENRTWKVDAGSRSIDIELTTLASANHIEMSPSDAGFQDRYVVQEIIKEMAKNRPIDIKGKKGFKVLLLNEVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRINAPSEEQIVRALEFIGKKEDLQLPSGFGARIAEKSNRNLRRAILSLETCGVQQYPFSSKQTIPPMDWEEYIYEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYELLKKLDAELKLEVCHWAAYYEHRMRLGQKAIFHLEAFVAKFMSVYKAFLIATFG 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2084 394 Pfam DNA polymerase III, delta subunit 58 228 - -
Alju03g2084 394 SMART AAA_5 73 232 IPR003593 GO:0016887
Alju03g2084 394 Gene3D - 230 289 - -
Alju03g2084 394 Gene3D - 40 229 IPR027417 -
Alju03g2084 394 CDD AAA 59 230 - -
Alju03g2084 394 CDD HLD_clamp_RFC 229 297 - -
Alju03g2084 394 FunFam Replication factor C subunit 3 292 385 - -
Alju03g2084 394 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 43 378 - -
Alju03g2084 394 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 279 IPR027417 -
Alju03g2084 394 FunFam replication factor C subunit 3 230 288 - -
Alju03g2084 394 Gene3D - 292 385 - -
Alju03g2084 394 SUPERFAMILY post-AAA+ oligomerization domain-like 291 386 IPR008921 GO:0003677|GO:0006260
Alju03g2084 394 FunFam Replication factor C subunit 5 40 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2084 Alju-ChrAlju03 48245755 48250053 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2084 41 394 Core DNA Replication Machinery Family AT5G27740 82.768 0.0 642