Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2080 ATGGGCCTATTTCTTCTTCCGTTCTTCGTCTTTATCAATTTGTCGGCATTTTCAGCTGGCAATGACGAGACCGCGGTCAGAGGAATTGATCTGGAAAGTCCAGTTTTGAATATCCACGCATTGCCACTTTCTGGAAAAACATATACTCATGGTGCTAAGGACATATTCAGATGTGAACGTGTTCATGTATATGGACTCTCAAGATTGAAACTCTGGAGTTATGCGAGTTCATTCCGCATTACTTTGGCTCCCTCAGCTGAAATTCCTGAAAAGTTCCATAACAAGATCCACGTTTGTTTCCACAGGAATAATTCACTAGGATGGTGCCAATGCGAAAAGGCCGAATTTAGAAGTGTCCAGAAGGGGATCTGGAGTGCTGTTATGTCTCCATATGAAAAAAGATATATTGATGTGAGATTCACTGATGAAATACCAGGTTCTGTTGTAGCCGCTCTTGAAGAAGATTTTCACCAATGGCGACTTGTGTGTCTTGCAGTGGGATTCATACTATTGTTGTTGGCTCCCATTATTAGCAGTTGGGTTCCATTTTATTACAGCAGTTCAATGGCTATAGGAGTCTTTCTTGTTATTATAATCCTTCTTTTTCAGGGCATGAAATTGTTGCCAGCTGGAAGAAAAAATATCTTTTACCTTGCCATATCTGGATCAGTGCTTGGAGCCGGGTCCTTCCTTGTGCACCACTTCTCTGTCTTCATTAACTCAATTCTTCAGAGTTTTGGTTTGAGTGAAGAGATGCATAATCCAGTTGCAGTTTTTGTAATAGTGGGGATCATCCTGGCTGGAGCTGCATTAGGCTATTGGATTGTTAGGAGATTTGTTATCTCAAAAGATGGCGGCGTGGACTCTAGCATTGCGCAATTTGTGAAATGGGCAATGCGCATCCTCGGTGCCACATTTATTTTGCAGAGCACTCTTGATCCTCCTCTGGCAATTGTTGCGTTGGTTTTTTGTGGAGCTTTCTGCAAACTTATATCTTCTATAAGGCATCTTTTTGGATGGTATGAAGCTTCAGGGAAGGATAATTATACATCATGGCAAGCTGGGAAGGTGATCAGAGGGCGTGGTCGTGCTGAATTCTTAAGCAAGACAACCCCGAACGAAAAATTGTGGAATAGCCCTAAAATTCAGTCTGCATGGTCGAATTCTCCTGTAAAAGGAATAGTATCACCATCTTATAGGAATGGGATGTCGTCACCCCCATCTTCAGGAGCGCGAGTAGGAGAGGATTATTATTCAACTTTCCACAAGACAGGCAACAGAAAGAAGTTCACAAAGAAAGAGTGGGATGATTTCACACTGGAATCCACTAGACAAGCCCTATCAGAATGGGCATCATCTCCAGAATTTACTAAGTGGATTGTGGAGCATGCAGACCGGATACAGCTCCTTCCAAGCGAAGGTTCAGATGGAGCAGAGGAAAGTGAATCGGATTCCTCTGACATACGAAATGAAAATGGATATCGAGTTTTTAGTTGGTCGTCTATTCTCTCTATTGTGGTGAAACTTCAAACACCGACAATCTCCGGGAAGAACGTGATGCCCCCGCCGAACCGGAGCATTTTGGTCTCTCCCTCTAGCTCTCGGTCGGTGACGGAGACCGTGAATGGTTCTCACAACTTCGTAATCAGAGGCTACTCTCTTGCCAAAGGGATCGGCGTCGGCAAGCACTTAGCCAGCGAGAATTTCACGGTCGGTGGGTTCCAGTGGGCTATATATTTCTATCCCGATGGCAAGAATCCCGAAGACAATTCTGCTTATGTTTCGGTCTTTATTGCGCTTGCGAGCGAGGGTACTGATGTACGAGCATTGTTCGAGCTGACTTTGGTGGACCAAAGCGGAAATGGGAAGCACAAAGTTCATAGCCACTTCGATCGCTCGCTTGAGAGCGGGCCCTATACGCTGAAGTACAGAGGCAGCATGTGGGGCTATAAACGGTTTTTCAAACGAGCTCAGCTTGAGGCATCTACCTTCCTTAAAGATGACTGCTTGAAGATAAATTGCACTGTTGGTGTTGTAGTCTCGTCTATAGATTGTTCAAAATTAAACAGCATACAAGTTCCTGAATCTGATATTGGAGCACATCTTGGCACGCTATTAGAGAATGAGGAAGAAGCAGATGTCATTTTCTCTGTTTCTGGGGAAAAGTTTCATGCACATAAGCTTATATTGGCTGCTCGGTCTGCTGTATTTGAGAGTGAACTTTTCAACGGGATGGAGGAAGATAGTAAAGAGATAGTTGTTACTGACATGGAACCAAAGGTTTTCAAGGCATTGCTTCACTTTATTTATAAAGACACACTTATAGACGATGAAGAGCTCTTCATATCACAATCATCAGTCTTGCCATCAGTGTCTGATTCATTTGCCGCAAAATTGTTAGCTGCTGCAGAAAAGTATGATTTGCCAAGACTCAAACTAATGTGCGAGTCTGTACTTTGCAAAGACATGTCTGTAGATTCTGTTTCTTATATACTGGCCCTTGCTGATCATTATCATGCGACAGAGCTGAAGTCCATTTGTCTAAAATTTTCTGCTGAAAACCTTGTTGCTGTGATGCAATCTGATGGTTTCGAGTACCTTAAGGAGAACTGTCCATTGCTACAATCAGAACTGCTAAAGACAGTAGCAGGGTGCGAGGAAGAATTTAGCGGAGAAGGAAAATGCCGAAGTGTGTGGGCCCAATTTTCGGATGGCGCTGACACAAATGATAAAAGTGTGAGACAACAAACCTGGGAAAATGGTGTTGAAAGAAATCAAGGTCTATGGGTTCAGCTTTCTGATGGTGTTAACAATAATGGTAGGAGTCCAGGGCAAGAAGCTTGA 2844 0.4342 MGLFLLPFFVFINLSAFSAGNDETAVRGIDLESPVLNIHALPLSGKTYTHGAKDIFRCERVHVYGLSRLKLWSYASSFRITLAPSAEIPEKFHNKIHVCFHRNNSLGWCQCEKAEFRSVQKGIWSAVMSPYEKRYIDVRFTDEIPGSVVAALEEDFHQWRLVCLAVGFILLLLAPIISSWVPFYYSSSMAIGVFLVIIILLFQGMKLLPAGRKNIFYLAISGSVLGAGSFLVHHFSVFINSILQSFGLSEEMHNPVAVFVIVGIILAGAALGYWIVRRFVISKDGGVDSSIAQFVKWAMRILGATFILQSTLDPPLAIVALVFCGAFCKLISSIRHLFGWYEASGKDNYTSWQAGKVIRGRGRAEFLSKTTPNEKLWNSPKIQSAWSNSPVKGIVSPSYRNGMSSPPSSGARVGEDYYSTFHKTGNRKKFTKKEWDDFTLESTRQALSEWASSPEFTKWIVEHADRIQLLPSEGSDGAEESESDSSDIRNENGYRVFSWSSILSIVVKLQTPTISGKNVMPPPNRSILVSPSSSRSVTETVNGSHNFVIRGYSLAKGIGVGKHLASENFTVGGFQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLVDQSGNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASTFLKDDCLKINCTVGVVVSSIDCSKLNSIQVPESDIGAHLGTLLENEEEADVIFSVSGEKFHAHKLILAARSAVFESELFNGMEEDSKEIVVTDMEPKVFKALLHFIYKDTLIDDEELFISQSSVLPSVSDSFAAKLLAAAEKYDLPRLKLMCESVLCKDMSVDSVSYILALADHYHATELKSICLKFSAENLVAVMQSDGFEYLKENCPLLQSELLKTVAGCEEEFSGEGKCRSVWAQFSDGADTNDKSVRQQTWENGVERNQGLWVQLSDGVNNNGRSPGQEA 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2080 947 ProSiteProfiles BTB domain profile. 712 778 IPR000210 GO:0005515
Alju03g2080 947 SMART math_3 547 659 IPR002083 GO:0005515
Alju03g2080 947 Gene3D - 822 896 - -
Alju03g2080 947 SUPERFAMILY TRAF domain-like 539 678 - -
Alju03g2080 947 ProSiteProfiles MATH/TRAF domain profile. 542 676 IPR002083 GO:0005515
Alju03g2080 947 Pfam NEMP family 151 424 IPR019358 -
Alju03g2080 947 CDD MATH 543 676 IPR002083 GO:0005515
Alju03g2080 947 CDD BACK_AtBPM-like 820 881 IPR034090 -
Alju03g2080 947 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 541 680 IPR008974 GO:0005515
Alju03g2080 947 SMART BTB_4 712 823 IPR000210 GO:0005515
Alju03g2080 947 CDD BTB_POZ_BPM_plant 698 820 - -
Alju03g2080 947 FunFam BTB-POZ and math domain 1 688 817 - -
Alju03g2080 947 Gene3D Potassium Channel Kv1.1; Chain A 688 817 IPR011333 -
Alju03g2080 947 PANTHER TRANSMEMBRANE PROTEIN (DUF2215) 4 473 - -
Alju03g2080 947 Pfam BTB/POZ domain 704 821 IPR000210 GO:0005515
Alju03g2080 947 SUPERFAMILY POZ domain 691 821 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2080 Alju-ChrAlju03 48221759 48232789 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Alju03g2080 NEMP 1.3e-60 No_clan