Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2076 ATGGCTGACCCTCGGCGTCATCCTTCTTCCGCCGCCTCTTCCACCCCTCCCTGCGGCGCCTGCAAGTTCCTCCGCAGGAAGTGCATTGCTGGCTGCATCTTTGCTCCCCACTTTAGCTCCGATCAGGGATCCGCCCGCTTCGCCGCCGTCCACAAGGTCTTCGGCGCTAGCAATGTCTCTAAGCTCTTGCTTCATATTCCCGTCAACCGCCGCCACGAAGCCGTGGTTACCATATCCTATGAGGCTCAAGCTCGCTTGTCCGATCCTGTTTATGGCTGTGTTGCCACTATCATGTCTTTGCAACAACAGGTGGCATCTCTGCAAGCAGAGCTAGGGATGGTTCAAAGTCAGCTGATGAACAGTAGGTATGCATTGGCAAGTGCTGTGCAGAGCTCGCAGCAGCCAAACATGAACATAGGACTCCAATCAGCGTACTCCAACAACAACAATTCATGTGCTTCGACCAATCTCATGAACATGAGCAGCAGCTTCAGCCCTTCTGGTTTTGACCTAGTAATGGAGGCACCACCTTCGTCCCACAACTTGGACCCTACTCTTCAATTCTCTCGCTTGTCCCAGGACGACGAAGACGATGAACAAGATAGCAGGATTCCCCATGTTTTCAACCATGACATCCTTCACCCTTGA 648 0.5309 MADPRRHPSSAASSTPPCGACKFLRRKCIAGCIFAPHFSSDQGSARFAAVHKVFGASNVSKLLLHIPVNRRHEAVVTISYEAQARLSDPVYGCVATIMSLQQQVASLQAELGMVQSQLMNSRYALASAVQSSQQPNMNIGLQSAYSNNNNSCASTNLMNMSSSFSPSGFDLVMEAPPSSHNLDPTLQFSRLSQDDEDDEQDSRIPHVFNHDILHP 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2076 215 Coils Coil 97 117 - -
Alju03g2076 215 Pfam Lateral organ boundaries (LOB) domain 17 115 IPR004883 -
Alju03g2076 215 PANTHER LOB DOMAIN CONTAINING PROTEIN 13 169 - -
Alju03g2076 215 ProSiteProfiles LOB domain profile. 16 118 IPR004883 -
Alju03g2076 215 MobiDBLite consensus disorder prediction 192 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2076 Alju-ChrAlju03 48200259 48201494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2076 17 200 AS2 family AT3G03760 58.673 4.28e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Alju03g2076 LOB 5e-37 No_clan