LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju03g2053	ATGGTTTCTGATTTTTCTTTCCGCCCGTTCGCATTCAACTATTGCGACTACAGCCTTTTAATGATTTCTGATGTTTCTTTGCCAAATGAATATATAAATGAACAGATTATCATATTTAAGCACCTTGTCATGGAAATTCACTTTCAGCAACCAAAGCAGTTTCAGAAAGCATCAGCTGTTCCAAACAGAAGAGGAGGCAAGTTCAAAGGAAGGAACAAGAACAATGGCACAAACAAATTTGTTGGGGTGAGACAAAGACCTTCTGGGAGATGGGTGGCTGAGATCAAAGACACAACCCAGAAGATAAGAATGTGGCTTGGAACATTTGAGACTGCAGAAGAAGCGGCCAGGGCTTATGATGAAGCCGCCTGCCTCCTTCGAGGATCCAACACTCGCACCAACTTCATCACTCGTGTCTCCATGGATTCTCCTCTTGCTTCTCGTATCCGAAATCTGCTTAACAACAGAAAAGGAACCAAAGAACAAGATGTTGATGCTTCTTCCTCAAGAGTCAACCCTACTAGCTCTACCAGTACTAGGAGCTCAGACTCAAGCAATGGTGAAAAAAATGATAGTGCTCTTTCTAGTGGGAAAATTCAGAACACAGAACTATTTGCTGATGGGTATAGACCAGATTTGAGCAGTTGCAGGGAGGGGTTTGATTTAGGTTCCCAGTCAAATCTTTCATGGGGTGTTGGACCTTTCATTGATCATTTTCCTTTTGCTCAAGTATTGGAATTGCCAAAGTCTGAAGCTGTTGCTGACACAGTTGAGTTAGAGATTTCAGAATTTGAGAGAATGAAAGTTGAAAGACAAATATCAGCTTCACTCTATGCAATTAATGGAGTGCATGAGTACATGGAAACAGTCCAGGACTCTAATGAAGAAGCTCTTTGGGATCTTCCACCCTTATGGTCAATGTTCTGCTAA	930	0.4183	MVSDFSFRPFAFNYCDYSLLMISDVSLPNEYINEQIIIFKHLVMEIHFQQPKQFQKASAVPNRRGGKFKGRNKNNGTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITRVSMDSPLASRIRNLLNNRKGTKEQDVDASSSRVNPTSSTSTRSSDSSNGEKNDSALSSGKIQNTELFADGYRPDLSSCREGFDLGSQSNLSWGVGPFIDHFPFAQVLELPKSEAVADTVELEISEFERMKVERQISASLYAINGVHEYMETVQDSNEEALWDLPPLWSMFC	309

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju03g2053	309	CDD	AP2	79	135	IPR001471	GO:0003700\|GO:0006355
	Alju03g2053	309	Pfam	AP2 domain	79	128	IPR001471	GO:0003700\|GO:0006355
	Alju03g2053	309	Gene3D	AP2/ERF domain	78	138	IPR036955	GO:0003700\|GO:0006355
	Alju03g2053	309	ProSiteProfiles	AP2/ERF domain profile.	79	136	IPR001471	GO:0003700\|GO:0006355
	Alju03g2053	309	PRINTS	Ethylene responsive element binding protein signature	80	91	IPR001471	GO:0003700\|GO:0006355
	Alju03g2053	309	PRINTS	Ethylene responsive element binding protein signature	102	118	IPR001471	GO:0003700\|GO:0006355
	Alju03g2053	309	MobiDBLite	consensus disorder prediction	154	197	-	-
	Alju03g2053	309	MobiDBLite	consensus disorder prediction	165	197	-	-
	Alju03g2053	309	FunFam	ethylene-responsive transcription factor RAP2-11	78	137	-	-
	Alju03g2053	309	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	67	274	-	-
	Alju03g2053	309	SUPERFAMILY	DNA-binding domain	79	136	IPR016177	GO:0003677
	Alju03g2053	309	SMART	rav1_2	79	142	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju03g2053	Alju-ChrAlju03	48010937	48014116	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju03g2053	67	309	AP2-EREBP Transcription Factor Family	AT5G19790	42.857	4.42e-49	162

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju03g2053		AP2	7.3e-14	CL0081