Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2028 ATGGATGTTTGCCGGAATACTTCAGTTCCCGGCGACTGCGAACAAGAGCAGCTCCTCTTGTCTTCCTGCTCAAAGCTTTCAACCTTCTCAACCACTCTTGACGACCTCTTCTCTTCTCATAACACGGAAGTGGATGTTGGCTTAGAATGGCTTTCTGTATTTGTGGAAGACTGTTTTTCCAGCTCAGCATGTTGCCTCTTGGCGCCTACTGATGCCAAAAACACACAGGCAAACTCTAAACCCTCCGTACAATTACAGAGAACCCAGCAAAAAAATCAGTCTCCTCTGCAAAATTTTGCGGTGCCAGGTAAGGCAAGAAGCAAGAGGAAAAGGCTTTCAGCCCCAAGAACCAAGAACCCATTAAGCAGCTGGTCAAACCATTTGAACCCACAAAATGAACCCATAGCTTCAGACCCTCCTCTTCTTAAACAAGCCTACTGGTTAGCTGATAGTGAACTCATGGTACCCAAGAAGGAAGATGAGCAAGTAGAAACAGAGGATCAAAAAGCAGAGCAAGAGGTGGAAGAAGAGAAGAGGACTGTGAGGAAGAAGGACAGTTTTGAGAGCTTAGTCTCAGAGTGTGAAGAAGGTAACAATGGTCAGAATCAAATGCCTAGAAGGTGCACTCATTGCCTTGCACAGAGGACCCCACAATGGAGGGCAGGGCCATTGGGTCCAAAAACACTATGTAATGCATGTGGAGTGAGATACAAGTCTGGTAGATTGCTTCCAGAATATAGGCCAGCCAAGAGTCCTACTTTTGTAAGCTACTTGCACTCCAATTCCCACAAAAAGGTCATGGAGATGAGAATGGCTGTTCTGTCTCCTGTTCCTACTAGTGAGGACTAA 849 0.4605 MDVCRNTSVPGDCEQEQLLLSSCSKLSTFSTTLDDLFSSHNTEVDVGLEWLSVFVEDCFSSSACCLLAPTDAKNTQANSKPSVQLQRTQQKNQSPLQNFAVPGKARSKRKRLSAPRTKNPLSSWSNHLNPQNEPIASDPPLLKQAYWLADSELMVPKKEDEQVETEDQKAEQEVEEEKRTVRKKDSFESLVSECEEGNNGQNQMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVLSPVPTSED 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2028 282 SMART GATA_3 202 256 IPR000679 GO:0006355|GO:0043565
Alju03g2028 282 MobiDBLite consensus disorder prediction 75 100 - -
Alju03g2028 282 MobiDBLite consensus disorder prediction 75 137 - -
Alju03g2028 282 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 203 266 - -
Alju03g2028 282 ProSitePatterns GATA-type zinc finger domain. 208 233 IPR000679 GO:0006355|GO:0043565
Alju03g2028 282 Coils Coil 160 180 - -
Alju03g2028 282 ProSiteProfiles GATA-type zinc finger domain profile. 202 238 IPR000679 GO:0006355|GO:0043565
Alju03g2028 282 Gene3D - 198 269 IPR013088 GO:0006355|GO:0008270
Alju03g2028 282 PANTHER GATA TRANSCRIPTION FACTOR 16 274 - -
Alju03g2028 282 MobiDBLite consensus disorder prediction 157 177 - -
Alju03g2028 282 MobiDBLite consensus disorder prediction 116 133 - -
Alju03g2028 282 FunFam GATA transcription factor 198 277 - -
Alju03g2028 282 Pfam GATA zinc finger 208 242 IPR000679 GO:0006355|GO:0043565
Alju03g2028 282 CDD ZnF_GATA 207 254 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2028 Alju-ChrAlju03 47796018 47797138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2028 21 270 C2C2-Gata Transcription Factor Family AT4G32890 39.453 6.46e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Alju03g2028 GATA 1.2e-14 CL0167