Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g2009 ATGAACGATCTAATGACCAAATCATTCACCAGCTACGTGGATCTGAAGAAAGCTGCAATTAAAGACGAAGTGGATCTGGAAGCTGGTCTTCCACATTCCGGCGTGGAACTTCGATCTTCAACAAATCAATTGGATACCGACATGGGTCTCTTCCTGGAAGAGGCCGAGAAGGTGAAAACAGAGATAGGGGATCTCCGTGACATTCTGGGAAAACTTCAGCAAGCAAATGAAGAAAGCAAGTCCCTGCACAAGCCTGAGGCTCTAAAATCCTTGAGGAACAGAATCAACGCCGACATCGTCTCTGTTCTCAAGAAGGCTAGAACAATCCGGTCTCAATTGGAAGAAATGGACCGAGCTAATGCGGCCAATAGGAGGCTCTCTGGTCTCAAAGATGGCACCCCTGCTATTTACAGAACAAGAATTGCAGTCACCAATGGCCTTCGCAAGAAACTCAAGGAGATAATGATGGAGTTTCAGGATCTGAGGCAGAGGATGATGACTGAGTACAAGGAGACAGTGGGAAGGCGCTATTTTACTGTAACAGGGGAGCACCCAGAAGAAGAAGTGATTGAAAAGATCATCTCCAATGGGGAAGAGGAGTTCTTAAGCAAAGCAATTCAAGAACACGGGAGGGGGAAAGTTCTAGAGACTGTGGTGGAGATACAGGATAGGCACGATGCTGCGAAAGAGGTCGAGAAGAGTCTTCTGGAGCTACACCAGGTGTTTCTGGATATGGCGGTGATGGTTGAAGCTCAGGGCGAGAAGATGGACGACATTGAGCACCATGTGCTTCATGCTTCTCACTATGTTAAGGATGGGACTAAAAATCTGCAGACCGCGAAGAAATACCAGAGCAGCAGCAGAAAGTGGATGTGCATTGGGATCATACTTCTTCTGATTCTGATCCTCGTAATCGTCATCCCTATTGCCACCAGTTTCAGCAGCTCTTGA 951 0.4721 MNDLMTKSFTSYVDLKKAAIKDEVDLEAGLPHSGVELRSSTNQLDTDMGLFLEEAEKVKTEIGDLRDILGKLQQANEESKSLHKPEALKSLRNRINADIVSVLKKARTIRSQLEEMDRANAANRRLSGLKDGTPAIYRTRIAVTNGLRKKLKEIMMEFQDLRQRMMTEYKETVGRRYFTVTGEHPEEEVIEKIISNGEEEFLSKAIQEHGRGKVLETVVEIQDRHDAAKEVEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLQTAKKYQSSSRKWMCIGIILLLILILVIVIPIATSFSSS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g2009 316 Pfam Syntaxin 51 253 IPR006011 GO:0016020
Alju03g2009 316 SMART tSNARE_6 213 280 IPR000727 -
Alju03g2009 316 SUPERFAMILY t-snare proteins 46 273 IPR010989 GO:0016020|GO:0016192
Alju03g2009 316 PANTHER SYNTAXIN 59 302 IPR045242 -
Alju03g2009 316 Coils Coil 144 164 - -
Alju03g2009 316 CDD SynN 48 205 IPR006011 GO:0016020
Alju03g2009 316 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 218 280 IPR000727 -
Alju03g2009 316 SMART SynN_4 43 170 IPR006011 GO:0016020
Alju03g2009 316 FunFam Syntaxin 132 211 311 - -
Alju03g2009 316 CDD SNARE_syntaxin1-like 217 279 - -
Alju03g2009 316 Gene3D - 214 314 - -
Alju03g2009 316 ProSitePatterns Syntaxin / epimorphin family signature. 224 264 IPR006012 GO:0005484|GO:0006886|GO:0016020
Alju03g2009 316 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 45 176 - -
Alju03g2009 316 Gene3D - 48 176 - -
Alju03g2009 316 Pfam SNARE domain 255 306 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g2009 Alju-ChrAlju03 47665474 47666424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g2009 1 316 SNARE and Associated Proteins AT1G08560 67.085 1.42e-138 393