LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju03g1973	ATGAGTCTTGATGTGGATCGAAGGCATGGAAAGAGGCCTTTGTCTTCAGAAGAAGCATCGGAGGAGGAAAAAAAGCAAGATTTTTTCATTCCTTCTGGATTATTCCCATCGCTATCCATACCTCACTCCCAAACACATCCCTATCTTATCGCCTCCACTACTGCTACTTCCACCTTCCCAATCCCACAAGTAACTCCTACCTCTTCTCCTGCCTTGATTGACACTCAGATCACCTCATCCCACAATTTCCCTCAAGGGAATATAATAGAAAGGAAAAAACACTATAGAGGAGTTAGGCAGAGACCGTGGGGGAAATGGGCAGCCGAAATCAGAGACCCAAACAAAGCAGCAAGAGTGTGGCTTGGCACTTTTGACACGGCAGAGGATGCTGCTGCTGCTTATGATGCTGCTGCTTTGAAGTTCAAAGGCAATAAAGCCAAGCTCAATTTCCCTGAACGTGTAGCCAATTTTCAAACTTCATCATTAGCTCCTCCTCCTCGGCCTCCGTCTGAGGTGGTGGCGCCGCTGCTGCCGGAATCTCAACCACCATGGCCGCCTCCTCCGTCAGGCGAGGGGTTTCCAAACCTAATGCAGTATGCTGAGGTGCTTTGTAGTAGGGACGATGATGATCTGCAACGAGCTGCTTCGGGACTTTATAATTATCATCAGAGTGTTAATGAGTCGTCATTTCTGTATGATTCTTCTTCATTCTTCTCATCTTCGTCGTTGTCAGCAGTGACTTCGTCTTCTTCCACGGCTGGGTCTGATCAACAAATAATGGGAGATAATCGTGGCTTTTCGGGTTCTTATTATTTTTTTGATAAGGGGACTGATGATTTTGATGGAAGCCACACGAGGTGA	861	0.4681	MSLDVDRRHGKRPLSSEEASEEEKKQDFFIPSGLFPSLSIPHSQTHPYLIASTTATSTFPIPQVTPTSSPALIDTQITSSHNFPQGNIIERKKHYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEDAAAAYDAAALKFKGNKAKLNFPERVANFQTSSLAPPPRPPSEVVAPLLPESQPPWPPPPSGEGFPNLMQYAEVLCSRDDDDLQRAASGLYNYHQSVNESSFLYDSSSFFSSSSLSAVTSSSSTAGSDQQIMGDNRGFSGSYYFFDKGTDDFDGSHTR	286

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju03g1973	286	MobiDBLite	consensus disorder prediction	1	26	-	-
	Alju03g1973	286	PANTHER	DNA-BINDING DOMAIN	53	234	IPR044808	GO:0003700\|GO:0009873
	Alju03g1973	286	CDD	AP2	93	152	IPR001471	GO:0003700\|GO:0006355
	Alju03g1973	286	Gene3D	AP2/ERF domain	93	153	IPR036955	GO:0003700\|GO:0006355
	Alju03g1973	286	Pfam	AP2 domain	94	143	IPR001471	GO:0003700\|GO:0006355
	Alju03g1973	286	PRINTS	Ethylene responsive element binding protein signature	95	106	IPR001471	GO:0003700\|GO:0006355
	Alju03g1973	286	PRINTS	Ethylene responsive element binding protein signature	117	133	IPR001471	GO:0003700\|GO:0006355
	Alju03g1973	286	FunFam	Ethylene-responsive transcription factor 2	93	152	-	-
	Alju03g1973	286	SUPERFAMILY	DNA-binding domain	94	152	IPR016177	GO:0003677
	Alju03g1973	286	ProSiteProfiles	AP2/ERF domain profile.	94	151	IPR001471	GO:0003700\|GO:0006355
	Alju03g1973	286	SMART	rav1_2	94	157	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju03g1973	Alju-ChrAlju03	47355796	47357549	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju03g1973	91	219	AP2-EREBP Transcription Factor Family	AT5G13330	52.941	1.82e-38	133

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju03g1973		AP2	2.4e-15	CL0081