Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1960 ATGGAGAGACATATGCTGCACAGAGCTCCCGGCGTGCCTTGGATTGAAGAAGTTGAAGACGCAGCGTCTTGGACCAGAACTAACAACGAAGGTGAGTCCAAGGGCCAGGACATTGCTTTGGGTGGTCCGTTAACGTCATTCAAATCCATGCTTGAAAGTGAATGGTACATGGATTCTGCTATCAATCCATCTCATCAAGATCTCCCTGGTTTCCCAGTTCACCAGGAAATCAGAGATATTGGTTTTTGTTCGAATCCAAATGATAATTTCCTGTTGCATCAGCCTATGGATTCATCTTCTTGTTCACCGTCATTCACTATCGACCCAGCGCAGTCACAGCCATTTTTACCTCCCAAATCCTGCTTTCCTCCTCTCTTCAACTCTGTCTGCAACAATCCTTTTGAGAATAGTGGCTTCGATTTGGGCTCTGAAAGTGGATTTCTCGGTCACTTTCAGGGAAATCAAAATCAGACTTCGAGTTCCCATGTTCTGATGGGATTTTCGGGTTTGAATACTCAACCACATATGGGCAATCTCGAGCTTAGTTCTAACACTGAATTCCCAGCGACTCAGTTGTTGCCTGCTGCTGACAATGGGGTCACAATCGGTGGCGGATTTAGTCCAATGGGTTTAGAGGCATATGGTTCTGGAAATGCTCTGTTTTCTAACAGGGCTAAGGTTTTAAGACCACTTGATGTTTTCCCTCCAGTTGGTGCTCAACCCACTCTCTTTCAGAAGCGAGCTGCGCTTCGCCAAACATCTAGCGGAGCTGATAAATTGGGAGGTTTGGAGATTTCTCCGTCTGGATTTAATGATTATTCAAACATGGAGAAGAAGAGGAAGTTAGAAGACGGCGAAACCGAAGAAGCCAGTATCGATGGGTCTGGGCTAAATTATGATTCTGATGATCTTAATGAGAATAATAAGGCGGAGGAGAATGGAAATAACGGCGGAAGCAATTCTAATGCAAACAGTACTGTTACAGGTGGAGATCAGAAGGGGAAGAAGAAGGGATTACCTGCGAAAAATCTCATGGCCGAGAGAAGGCGCAGGAAGAAACTAAATGATAGGTTATACATGCTTCGGTCGGTTGTTCCGAAGATTAGTAAGATGGATAGGGCTTCCATACTTGGGGATGCAATTGACTACTTGAAGGAGCTGCTTCAGCGGATCAACGATCTTCATAATGAGCTGGAGTCAACCCCACCTGGTTCACTGCCGCCACCTTCTACAAATGTTCACCCTTTGACGCCCACTCTCCCAACACTTCCCTTCAGGGTCAAGGAAGAACTTTGCCCTACCTCTTTGCCGAGCCCCAAGAACCAACCTTCGCGAGTGGAGGTTAGGTTGAGGGAAGGGAGAGCTGTGAACATACATATGTTTTGTGCCCGTAGACCAGGTCTTCTTCTTACCACCTTGAAGACTTTAGACAGCCTTGGATTGGACATTCAGCAGGCTGTTATCAGTTGTTTCAATGGCTTTGCTTTAGATGTGTTCCGAGCTGAGCAATGCAGAGAAGGCCAGGATGTTTCCCCCGAGCAGATTAGAGCAGTATTGTTAGAATCAGCGGGTTGCCATGGAATGTTGTGA 1590 0.4635 MERHMLHRAPGVPWIEEVEDAASWTRTNNEGESKGQDIALGGPLTSFKSMLESEWYMDSAINPSHQDLPGFPVHQEIRDIGFCSNPNDNFLLHQPMDSSSCSPSFTIDPAQSQPFLPPKSCFPPLFNSVCNNPFENSGFDLGSESGFLGHFQGNQNQTSSSHVLMGFSGLNTQPHMGNLELSSNTEFPATQLLPAADNGVTIGGGFSPMGLEAYGSGNALFSNRAKVLRPLDVFPPVGAQPTLFQKRAALRQTSSGADKLGGLEISPSGFNDYSNMEKKRKLEDGETEEASIDGSGLNYDSDDLNENNKAEENGNNGGSNSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLPPPSTNVHPLTPTLPTLPFRVKEELCPTSLPSPKNQPSRVEVRLREGRAVNIHMFCARRPGLLLTTLKTLDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVSPEQIRAVLLESAGCHGML 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1960 529 MobiDBLite consensus disorder prediction 255 342 - -
Alju03g1960 529 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 408 IPR036638 GO:0046983
Alju03g1960 529 Coils Coil 381 401 - -
Alju03g1960 529 SMART finulus 344 393 IPR011598 GO:0046983
Alju03g1960 529 MobiDBLite consensus disorder prediction 274 288 - -
Alju03g1960 529 FunFam BHLH transcription factor 334 402 - -
Alju03g1960 529 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 183 525 - -
Alju03g1960 529 Pfam Helix-loop-helix DNA-binding domain 345 387 IPR011598 GO:0046983
Alju03g1960 529 CDD bHLH_AtAMS_like 341 408 - -
Alju03g1960 529 Gene3D - 332 401 IPR036638 GO:0046983
Alju03g1960 529 MobiDBLite consensus disorder prediction 310 331 - -
Alju03g1960 529 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1960 Alju-ChrAlju03 47264131 47267352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1960 23 502 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 55.172 5.71e-146 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju03g1960 HLH 1.6e-09 No_clan