Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1890 ATGGTGAAATACTCGAGAGAGCCTGACAATCCCACCAAGTCTTGCAAAGCCCGAGGTTCAGATCTCAGAGTTCATTTTAAGAACACAAGGGAGACAGCTTTTGCAATCAGGAAGTTGCCCTTGGTAAAGGCTAAAAGGTATCTGGAAGATGTTATTGCTCACAAACAAGCCATTCCCTTTCGACGGTATTGTGGTGGAGTAGGCCGCACTGCACAAGCCAAAAACCGTCATTCAAATGGTCAAGGACGCTGGCCTGTCAAATCAGCAAAGTTTATCCTTGATATGTTGAAAAATGCTGAAAGTAATGCAGAAGTGAAAGGTCTTGATGTAGATGCACTATACATTTCCCACATTCAGGTAAATCAAGCTCAGAAGCAGAGGCGCCGCACCTACCGTGCTCATGGGAGAATTAACCCATACATGTCATCACCCTGCCACATTGAGCTGATTTTGTCTGAAAAGGAGGAGCCAGTCAAAAAGGAGCCCGAGACACAGCTGGCTCCCAGGACTTAA 513 0.46 MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLVKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDMLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAPRT 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1890 170 NCBIfam 50S ribosomal protein L22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Alju03g1890 170 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Alju03g1890 170 FunFam 60S ribosomal protein L17 1 170 - -
Alju03g1890 170 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Alju03g1890 170 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Alju03g1890 170 PANTHER 60S RIBOSOMAL PROTEIN L17 1 168 IPR005721 GO:0003735|GO:0006412|GO:0015934
Alju03g1890 170 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Alju03g1890 170 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Alju03g1890 170 Gene3D Ribosomal protein L22/L17 1 169 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1890 Alju-ChrAlju03 46750000 46752931 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1890 1 170 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 89.412 2.62e-115 322