Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1886 ATGGGGGATGATTCCAATATTCGTGAAGAAACAGTAGCGATTCACAGCCTTGAAGGGGAAGCTGAAGGAGAAGAGAGAGATCCAGAAAGCAATCCACTGAATGAGCCACTGCTCAAGAGGAATCGCACACTTTCCACCAATCCACTTGCTCTCGTCGGAGCCAAAGTTTCATACATAGAAAGCTTGGACTACGAGATCAATGAGAATGATCTGTTCAAGCATGATTGGAGGAGCCGATCGAAAGTTCAAGTGTTACAGTACATTTTCTGTAAATGGTCACTGGCTTTCCTTGTTGGACTTCTCACCGGACTTATAGCCACCCTCATCAACCTTGCAATTGAGAACATTGCGGGATACAAGATTCTTGCGGTTGTTGGATTCATCGAAGAGGACAGGTATTTGGCGGGCTTCTTATATTTCACCGGCATAAATTTCTTATTGACATTCGTTGCTGCTCTTCTGTGTGTGTGTTTTGCACCCACAGCAGCTGGACCTGGTATACCTGAAATCAAAGCTTACCTTAATGGCGTCGATACTCCAGACATGTATGGTGCCACGACATTGATCGTTAAGATAATTGGAAGCATTGGAGCTGTGGCTGCAGGGCTGGATTTAGGAAAAGAAGGGCCATTGGTACATATTGGGGCCTGCCTAGCTTCCTTATTAGGCCAAGGAGGCACTGAGAAACACCGAATTAAATGGCGATGGCTTCGATATTTCAACAACGATCGAGACCGCCGTGATCTTATCACATGTGGAGCTTCCTCGGGGGTTTGTGCAGCATTCAGGGCACCTGTTGGAGGAGTTCTGTTTTCTCTAGAAGAGGTTGCAACTTGGTGGAGAAGTGCTCTCCTCTGGAGAACCTTTTTTAGCACAGCTGTGGTGGTGGTAGTACTCAGGGCCTTTATTGAATTATGCAATTCTGGGAAATGTGGCCTCTTTGGCACTGGAGGGTTGGTCATGTTCGATGTCAGTAGTGTCACAGTGAGATACCATGTAATGGATATCATCCCTGTTGTTATCATTGGCATCCTTGGTGGATTATTGGGAAGCCTCTATAACTATCTTCTTCACAAGGTCCTCAGAGTCTACAGTCTCATTAATCAGAAGGGGAAAATGCATAAGCTCCTACTCAGTCTCTCAGTTGCACTCTTCACATCAGTGTGCCAATATTGTATTCCATTCCTATCAACATGCGTCCCCTGTGATCCGTCACTTCCAGAAGATGTCTGCCCCACAAATGGACGGTCTGGGAATTTTAAACAGTTCAATTGCCCCAGTAGTCACTACAATGAACTTGCTACTTTGTTGCTCACCACTAATGATGATGCTGTTAGAAACATATTCTCAACCAACACTCCACATGAGTATCATTCATCTTCCCTCCTAATTTTCTTTGCACTCTATTGCGCATTAGGACTCATTACTTTTGGGATTGCTGTGCCATCTGGGCTCTTCCTCCCAATAATCCTCATGGGTTCTGGTTATGGCCGTCTTCTTGGCCTCTGGATGGGACCTCACACAAAAATTGACCAGGGCTTATTTGCTGTTCTGGGTGCAGCCTCCCTCATGGCTGGTTCAATGAGAATGACAGTATCAGTTTGTGTGATCTTCCTTGAACTCACCAACAATCTTCTGCTACTACCCATCACAATGATTGTTCTCCTGATAGCCAAGACTGTTGGAGACAGTTTTAACCCTAGCATCTATGAAATTATACTGCACTTGAAAGGGCTTCCTTTCTTGGACGCAAATCCTGAGCCATGGATGAGAAATCTCGCAGTGGGTGAGCTTGTTGATGTAAAACCACCAGTGATTAGCCTCAATGGAACAGAGAAGGTAGCTCGCATAGTGGAAGTTCTTAAAAACACTACACACAGTGGTTTCCCTGTTGTGGATGAACCAGGGGAAACTTCAACAGGAGTGGCCAAGCTTCATGGACTGATCCTAAGAGCACACCTTGTGGGAGCGCTAAAGAAGAAATGGTTCCTGAAGGAAAAAAGGAGGACAGAGGAATGGGAAGTGAGAGAGAAATTTACGTGGGTAGATCTGGCAGACAGAGAAGTGAATATAGAGGAGGTGGCCGTGACGAGGGAGGAAATGGAATTGTTTGTTGATCTACATCCTTTCACAAATATGACTCCTTTCACCGTTCTGGAGAGCATATCTGTGGCAAAAGCGATGGTCCTCTTCAGACAACTAGCACTTCGACATATGCTTGTTTTGCCCAATTATCAAGCATCTGGGCAATCTCCTGTGATTGGGATCTTGACCAGGCAGGATCTACTAGCCCACAACATTCTTGCGGTCTTTCCTCACCTTAAAAAAACGTGA 2334 0.4546 MGDDSNIREETVAIHSLEGEAEGEERDPESNPLNEPLLKRNRTLSTNPLALVGAKVSYIESLDYEINENDLFKHDWRSRSKVQVLQYIFCKWSLAFLVGLLTGLIATLINLAIENIAGYKILAVVGFIEEDRYLAGFLYFTGINFLLTFVAALLCVCFAPTAAGPGIPEIKAYLNGVDTPDMYGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGACLASLLGQGGTEKHRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIELCNSGKCGLFGTGGLVMFDVSSVTVRYHVMDIIPVVIIGILGGLLGSLYNYLLHKVLRVYSLINQKGKMHKLLLSLSVALFTSVCQYCIPFLSTCVPCDPSLPEDVCPTNGRSGNFKQFNCPSSHYNELATLLLTTNDDAVRNIFSTNTPHEYHSSSLLIFFALYCALGLITFGIAVPSGLFLPIILMGSGYGRLLGLWMGPHTKIDQGLFAVLGAASLMAGSMRMTVSVCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFLDANPEPWMRNLAVGELVDVKPPVISLNGTEKVARIVEVLKNTTHSGFPVVDEPGETSTGVAKLHGLILRAHLVGALKKKWFLKEKRRTEEWEVREKFTWVDLADREVNIEEVAVTREEMELFVDLHPFTNMTPFTVLESISVAKAMVLFRQLALRHMLVLPNYQASGQSPVIGILTRQDLLAHNILAVFPHLKKT 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1886 777 Gene3D Clc chloride channel 83 584 - -
Alju03g1886 777 MobiDBLite consensus disorder prediction 1 37 - -
Alju03g1886 777 Gene3D - 601 764 IPR046342 -
Alju03g1886 777 PRINTS Plant CLC chloride channel signature 290 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Alju03g1886 777 PRINTS Plant CLC chloride channel signature 308 315 IPR002251 GO:0005247|GO:0006821|GO:0016020
Alju03g1886 777 PRINTS Plant CLC chloride channel signature 433 449 IPR002251 GO:0005247|GO:0006821|GO:0016020
Alju03g1886 777 PRINTS Plant CLC chloride channel signature 276 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Alju03g1886 777 PRINTS Plant CLC chloride channel signature 65 73 IPR002251 GO:0005247|GO:0006821|GO:0016020
Alju03g1886 777 ProSiteProfiles CBS domain profile. 710 776 IPR000644 -
Alju03g1886 777 CDD CBS_pair_voltage-gated_CLC_euk_bac 602 765 - -
Alju03g1886 777 ProSiteProfiles CBS domain profile. 601 666 IPR000644 -
Alju03g1886 777 SUPERFAMILY Clc chloride channel 69 584 IPR014743 -
Alju03g1886 777 CDD ClC_6_like 60 582 - -
Alju03g1886 777 Pfam Voltage gated chloride channel 148 562 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju03g1886 777 FunFam Chloride channel ClC3 83 399 - -
Alju03g1886 777 PRINTS Chloride channel signature 531 550 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju03g1886 777 PRINTS Chloride channel signature 160 177 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju03g1886 777 PRINTS Chloride channel signature 569 583 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju03g1886 777 PRINTS Chloride channel signature 481 501 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju03g1886 777 PRINTS Chloride channel signature 191 210 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju03g1886 777 PRINTS Chloride channel signature 255 274 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju03g1886 777 PRINTS Chloride channel signature 513 529 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju03g1886 777 MobiDBLite consensus disorder prediction 1 33 - -
Alju03g1886 777 Pfam CBS domain 596 659 IPR000644 -
Alju03g1886 777 SUPERFAMILY CBS-domain pair 587 764 IPR046342 -
Alju03g1886 777 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 36 768 - -
Alju03g1886 777 SMART cbs_1 604 659 IPR000644 -
Alju03g1886 777 SMART cbs_1 714 767 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1886 Alju-ChrAlju03 46727464 46731426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1886 22 777 Ion Channels AT3G27170 76.579 0.0 1201