Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1870 ATGGGTCGTGTGGTGGTGGCGCTGGTGGTGGTGGTGCAGTTATATGGAGGCTCATGCTCAGATGATGGCGGCGCCGTCGTCATGGATAACATGAGATTCGAGACGACGATGAGGATAGGAGAAATGCTTGATTTAGGGTCGCGCGTGGGAAAAGAGCAGAAGATAGCCATGGAAATCGCCGCCCAAGAATTTAATTGCCTGCTCTTCCATTTCCACCATTCTCACGGCAGCTCCGCTGCATCTGTCGCCGCCGGTAACTTCCACTTTATGGATCTCGCTCGCAGCAAGCAAGTGCAAGCTATCATAGGGACGATAACACACAACGAAGCGACTATGGCAGTTGAAACTAACAACACATCGAAGAACCTTCCTATCTTATCCCTCACTTCACTCGCAGTGAGCAGAGACACAGATATAATGCCATACTTCATCCAGTTGGGCACCGATATTACCTTCCACATTCGATGCTTTGCCGCCATTGTTGAAGAATTCAAGTGGCCCAAAGTGACAGCAATCTATGAACAAAATAACGGCATTTTCTCTGATCCAAATATACTAACCCTCTTTTTCCATTCGCTTCGCCTTGTTGGTGCTGAGATTGTTGACCATGCAGCTCTGCCTTCTCTGTCAAACCCTAGAATGGCGAATCTTCTTCTTGAGAGGGCAAAGCAAATGAGTTTGATGGGGAAAGAATCGGTATGGATCGTACCTGATGAGGTTGCTGGTCTCATTGATTTGGCGAATTCCTCTGTTATTCTTAACATGCAAGGTGTTATTGGATTTAAATCCCACTTTAACGAAATGAGCGAGACATTCAGACAATTCAGATTCAAATTTCGAAGAAAATTCGCGTTGGAGTACCCTGAAGAAGAGAACATTAACCCGAGTATCTATGCGCTTCGATCATACGATGCCATTCGGGCTATTGCTATCGCCGCAAAGAAATCACAGGGGAAGTTCTCTCGGGGAGAATTTTCAGAAAGCTTTCTTGCCAGCAACTTTGAAGGACTAAGTGGCAAGATTAGCTTTAAAAATGATAAGTTATTACGATCACAAGCCTTTGAAATAATTAACGTGATTGGGAAAAGCTATAGAGATTTGGCATTTTGGTCTCCAGCATTTGGTTTCTCTAAGAACCTTGCCAGGCATCAGGTAATGGAGGTGTCAACAAATAATGATTCTACTGAAACCTTAGAAACAGTTCATCGGCCAGGGAACTTACTTTCGGTTCCCAAGGGTTGGACTTATGGTAACGAGGGAAAAACATTGAGAATAGGTGTGCCTGCAAAAGGTGCCTTTACCCAGTTTGTGAATGTGACTTATGATCAGAGTCGGAATGACACTTCTATCACAGGCTTCTCAATTGATGTCTTCAAAGCTGCAGTTGAACGTCTGCCCTATCAGTTGCAATATGAATTTATACCAGTCAACTGCTCTTATGATGAAATGGTTCAGCAAGTCTACAAGAAGGAAATTGATGCTGCTGTTGGAGATACAGAAATAATGGCATATAGATATCGTTATGTAAGATTTTCTCAACCATATGTTGAATCTGGCCTTGACATGGTGGTGACTGTAAAGCCTAATAAATCAAAAGAAACGTGGATGTTCACGAGTGCATTCACAACAGAGGCGTGGCTGGTGATGGCAGCAATGCACATTTTCATCGGATTTATCATCTGGCTGATGGAACGGCAAGTGAATGAACAATTGAGGGGACTTGGGTCTATGCTTTGGTTTTTAGTCGCTGTAATCTTTTATGCACACAGAGAACCTATCCAAAATCCTTTTGCTCGAATTGTGTTGGCTCCATGGTTATTCATAATCCTTATTCTTACGACAAGTTTTACAGCTAGTTTGACATCCATGATGACCATCAGTCAGCTTGAACCGTCAGTGTTTGACATGCAAACCCTTCACAGGACAAATGCCCCTGTTGAGTGCAATGGAAATTCATTTATCGTGAGATATTTGATAGACGTACTAAAATTTAAGCCTAAGAACATTCGGAAAATTGATTCCATAAGGGATTACCCTACAGCCTTTAAGAAAAAGGACATTGAAGCAGCTTTCTTTGTTGCACCACATGCTAAAGTCTTCCTTGCCAAGTATTCATGCGCAGGCTTCACCAAAGCAGGGGACACTTTCAAGCTTGGAGGCTTTGGATTTGCTTTCCCAAAAGATTCCTCCAAACTTGCTAGTGACATATCAGAGGCAGTGCTGAATGTGATAGAGGATGGAGAAACACAATTAGAAGATGATATGATGTCCACTCTTAGTTGCTCCACTTCATATGACAAGAACCAAGAAGATAGATCATTGGGAATTCAGCCTTTCCTTGGTCTGTTTTACATTTCTGCAATTGTTGCTGTTCTTGCATGGTCATATTCCATCAAGGATTTGCTGATAAGCGTATTGCGAAACTTGATGACTCACATACGAGAAACATTTTCTCGTTTCTGGATAATATTACTATGGAGAGGGACAAAAGCATTTTTGGCTCAAATATACTCAGAATTCCAAACCGGGATTATTAGAAGAAGTTCTATTTCAGGGACAAATGATATAGAGGAGACAGCCTCTTCTGGTATTGAGCAGAGCCTGGGGGGTACCGAACTCGTTCATGCAGTAATGGTTCCTCATGCTCCCAGCTAA 2655 0.4275 MGRVVVALVVVVQLYGGSCSDDGGAVVMDNMRFETTMRIGEMLDLGSRVGKEQKIAMEIAAQEFNCLLFHFHHSHGSSAASVAAGNFHFMDLARSKQVQAIIGTITHNEATMAVETNNTSKNLPILSLTSLAVSRDTDIMPYFIQLGTDITFHIRCFAAIVEEFKWPKVTAIYEQNNGIFSDPNILTLFFHSLRLVGAEIVDHAALPSLSNPRMANLLLERAKQMSLMGKESVWIVPDEVAGLIDLANSSVILNMQGVIGFKSHFNEMSETFRQFRFKFRRKFALEYPEEENINPSIYALRSYDAIRAIAIAAKKSQGKFSRGEFSESFLASNFEGLSGKISFKNDKLLRSQAFEIINVIGKSYRDLAFWSPAFGFSKNLARHQVMEVSTNNDSTETLETVHRPGNLLSVPKGWTYGNEGKTLRIGVPAKGAFTQFVNVTYDQSRNDTSITGFSIDVFKAAVERLPYQLQYEFIPVNCSYDEMVQQVYKKEIDAAVGDTEIMAYRYRYVRFSQPYVESGLDMVVTVKPNKSKETWMFTSAFTTEAWLVMAAMHIFIGFIIWLMERQVNEQLRGLGSMLWFLVAVIFYAHREPIQNPFARIVLAPWLFIILILTTSFTASLTSMMTISQLEPSVFDMQTLHRTNAPVECNGNSFIVRYLIDVLKFKPKNIRKIDSIRDYPTAFKKKDIEAAFFVAPHAKVFLAKYSCAGFTKAGDTFKLGGFGFAFPKDSSKLASDISEAVLNVIEDGETQLEDDMMSTLSCSTSYDKNQEDRSLGIQPFLGLFYISAIVAVLAWSYSIKDLLISVLRNLMTHIRETFSRFWIILLWRGTKAFLAQIYSEFQTGIIRRSSISGTNDIEETASSGIEQSLGGTELVHAVMVPHAPS 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1870 884 CDD GluR_Plant 421 755 - -
Alju03g1870 884 Gene3D - 208 283 - -
Alju03g1870 884 SUPERFAMILY Periplasmic binding protein-like I 33 414 IPR028082 -
Alju03g1870 884 SUPERFAMILY Periplasmic binding protein-like II 404 750 - -
Alju03g1870 884 FunFam Glutamate receptor 534 667 - -
Alju03g1870 884 Gene3D - 304 421 - -
Alju03g1870 884 Pfam Receptor family ligand binding region 78 177 IPR001828 -
Alju03g1870 884 Pfam Receptor family ligand binding region 211 360 IPR001828 -
Alju03g1870 884 SMART GluR_14 422 753 IPR001320 GO:0015276|GO:0016020
Alju03g1870 884 Gene3D - 149 181 - -
Alju03g1870 884 Gene3D - 48 148 - -
Alju03g1870 884 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 796 IPR015683 -
Alju03g1870 884 FunFam Glutamate receptor 418 533 - -
Alju03g1870 884 Gene3D - 422 544 - -
Alju03g1870 884 Gene3D - 720 749 - -
Alju03g1870 884 Pfam Bacterial extracellular solute-binding proteins, family 3 447 749 IPR001638 -
Alju03g1870 884 Gene3D - 663 719 - -
Alju03g1870 884 Pfam Ligand-gated ion channel 750 788 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1870 Alju-ChrAlju03 46610095 46615922 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1870 92 792 Ion Channels AT5G11210 31.736 2.29e-112 362