Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1841 ATGTGGACCCCACTTTGTCATATTAATCACGCCATTACTCTCGGCTTTTCTTATTCTTTAAAACCCCCACCTCGACCGCACTTTGTTCCTTACAAACTCAGAACAAAGATGGCGCTCCTCGCAACTTGCTTTCTTCTTCTCTCTTTCTCTCTCATTATTTCCTTCGTCATCGCAGTTCAAGACCCCGAGCTAGTTGTACAAGACGTACACAGAAGAATCAACGCTTCTAGAAGGAATTTGGGGTATTTATCATGTGGAACCGGCAACCCCATTGACGACTGCTGGCGGTGCGACCCCAACTGGGAGAGGAACCGGCAGAGGCTAGCCGACTGCGCCATCGGCTTTGGCAAGGACGCCATCGGCGGAAGGAACGGCCGGGTGTACGTGGTGACAGACTCCGGCGACGACGACCCGGTGAACCCAAAGCCAGGAACGTTGAGATACGCCGTCATACAAGACGAGCCGTTGTGGATTATCTTCAAGAGAGACATGGTGATAACACTAAAGCAAGAGCTGGTGATGAACTCGTTCAAGACCATTGACGGGAGAGGAGCGAGCGTTCACATTGCCGGCGGCGGATGCTTAACGATACATTACGTCAGCAACATTATCATTCACGGCATTCACATTCATGACTGTAAGCCCACCGGACATGGTGATATCAGAGACTCTCCTCACCATTATGGGTGGTGGACGGTGTCGGACGGCGACGGAATCTCCATATTTAATTCCAGGCATATCTGGGTTGACCATTGCTCGCTCTCTAATTGCCGCGACGGTCTCATTGACGCTATCCATGGATCCACCGCCATCACCATCTCCAACAACTACATGACTCACCACGATAAAGTCATGCTCTTAGGCCACAGTGATTCTTACACTCAGGACAAGAACATGCAGGTCACTATCGCCTTCAACCACTTCGGAGAAGGCCTCGTCCAGAGAATGCCAAGGTGTAGGCACGGGTATTTTCATGTGGTGAACAATGATTATACGCACTGGGAAATGTATGCGATAGGTGGGAGTGCTAATCCGACGATAAACAGCCAGGGGAATAGGTTTCTGGCACCGGATAATAGGTTTAGCAAGGAGGTGACCAAGCACGAGGATGCTTCAGAGGGAGAGTGGAGGAACTGGAACTGGAGATCCGAAGGTGACTTGTTCTTGAACGGAGCTTATTTCCGGCAATCCGGTGCCGGAGCTTCTTCCAGCTACGCTAGGGCTTCAAGTCTCAGTGCGAGACCTTCTTCTCTTGTTGGCTCCATGACCGTGACTGCTGGTGTACTCACGTGCAGGAAGGGCGTGCGTTGCTGA 1314 0.5129 MWTPLCHINHAITLGFSYSLKPPPRPHFVPYKLRTKMALLATCFLLLSFSLIISFVIAVQDPELVVQDVHRRINASRRNLGYLSCGTGNPIDDCWRCDPNWERNRQRLADCAIGFGKDAIGGRNGRVYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFKRDMVITLKQELVMNSFKTIDGRGASVHIAGGGCLTIHYVSNIIIHGIHIHDCKPTGHGDIRDSPHHYGWWTVSDGDGISIFNSRHIWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDASEGEWRNWNWRSEGDLFLNGAYFRQSGAGASSSYARASSLSARPSSLVGSMTVTAGVLTCRKGVRC 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1841 437 SUPERFAMILY Pectin lyase-like 89 428 IPR011050 -
Alju03g1841 437 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Alju03g1841 437 PRINTS Pollen allergen Amb family signature 235 256 IPR018082 -
Alju03g1841 437 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
Alju03g1841 437 PRINTS Pollen allergen Amb family signature 379 403 IPR018082 -
Alju03g1841 437 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Alju03g1841 437 PRINTS Pollen allergen Amb family signature 408 431 IPR018082 -
Alju03g1841 437 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Alju03g1841 437 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Alju03g1841 437 FunFam Pectate lyase 88 430 - -
Alju03g1841 437 PANTHER PECTATE LYASE 18-RELATED 60 434 IPR045032 GO:0030570
Alju03g1841 437 Pfam Pectate lyase 169 354 IPR002022 -
Alju03g1841 437 SMART amb_all 163 360 IPR002022 -
Alju03g1841 437 Gene3D - 88 430 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1841 Alju-ChrAlju03 46400273 46401768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1841 37 437 Polysaccharide Lyase AT5G63180 75.802 0.0 631