Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1797 ATGGAGTCCGGCAATCTTTTCTTCGAGTCTTCCGCTTGCCGCGGGACCATGCTGTTCCTCCGAAATGGTGACATTAGATTTGGAGGAAGTTCGATGATGAGCACTGATGAAACCTCAAAGAAACGACCTTTCTTCAGCTCACCGGAGGAACTGTTCGACGAGGAATATTTTGATGAGCAACTGCCAGAGAAGAAGCGTCGTCTCACTCCTGAGCAGGTTCTCCTGTTGGAGAAAAGCTTTGAGGCAGAGAACAAACTGGAGCCAGTAAGGAAGACCCAGTTGGCCAATAAGCTGGGATTGCAGCCCAGGCAGGTTGCCGTGTGGTTTCAGAACCGCAGGGCTCGGTGGAAGACCAAGCAACTTGAAAGGGATTTTGATACTCTCAAGTCTTCCTACGACTCACTCCTTTTAAAATATGAATTCACTGTGAAGGAGAATGAAAAGCTGAAATCTGAGGTGGTATCACTGAATGAGAAGCTTCAAGCAAAGGATGTACCTAAAGCACCGATATCTGAGCAAAAAATTGAGCCTCTTCCAGTGGATACAGCCCAATTTTCAGCCCTGCCATTTAGCATGAGGGTGGAGGATCGTCTGAGCACGGGGAGTGGTGGAAGCTCAGTCGTAGACATGGATAGCTCACAGCTTGTTGTGGAGAGTGGTGATTCATACTTTCCGGCTGACAGCTATACCGGATACATTGCCTGTGTTAAAGGGGTTCAGTCGGAGGATGATGATGGGAGCGACGACGGACGTAGCTACTTCTCAGATGTGTTCGTGGCCCCTGAATCACATGGGCAAAGCCATGACGCAGGGGATGCATTTGGTTGGTGGGTTTGGTCTTAA 843 0.4911 MESGNLFFESSACRGTMLFLRNGDIRFGGSSMMSTDETSKKRPFFSSPEELFDEEYFDEQLPEKKRRLTPEQVLLLEKSFEAENKLEPVRKTQLANKLGLQPRQVAVWFQNRRARWKTKQLERDFDTLKSSYDSLLLKYEFTVKENEKLKSEVVSLNEKLQAKDVPKAPISEQKIEPLPVDTAQFSALPFSMRVEDRLSTGSGGSSVVDMDSSQLVVESGDSYFPADSYTGYIACVKGVQSEDDDGSDDGRSYFSDVFVAPESHGQSHDAGDAFGWWVWS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1797 280 Pfam Homeodomain 64 117 IPR001356 GO:0003677
Alju03g1797 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 53 196 IPR045224 GO:0003700
Alju03g1797 280 FunFam homeobox-leucine zipper protein ATHB-6-like 67 113 - -
Alju03g1797 280 CDD homeodomain 64 120 IPR001356 GO:0003677
Alju03g1797 280 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Alju03g1797 280 Coils Coil 139 159 - -
Alju03g1797 280 Pfam Homeobox associated leucine zipper 119 161 IPR003106 GO:0006355|GO:0043565
Alju03g1797 280 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Alju03g1797 280 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Alju03g1797 280 SMART HOX_1 62 123 IPR001356 GO:0003677
Alju03g1797 280 SUPERFAMILY Homeodomain-like 59 121 IPR009057 -
Alju03g1797 280 Gene3D - 58 126 - -
Alju03g1797 280 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1797 Alju-ChrAlju03 46074458 46076786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1797 1 279 Homeobox Transcription Factor Family AT3G01470 54.770 3.07e-86 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju03g1797 Homeodomain 2.9e-17 CL0123