Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1761 ATGGGTTCTTCACGTGGGGATTCCTATGGCCAATCCCAAATCCCTGGAGGAGGAGGAGTTGGAGGGGGGGCTACTTCACAGAAATTGACTACCAATGACGCTTTATCATATTTGAAGGAGGTGAAAGACATGTTTCATGACCAAAGAGAAAAATATGACATGTTCTTAGAGGTCATGAAAGATTTCAAGGCTCAACGGACTGACACTGCTGGTGTCATAGCAAGAGTGAAGGAACTATTCAAAGGGCATAATAACTTGATTTTTGGATTTAACACCTTCTTGCCTAAGGGGTATGAGATTACACTTGATGAGGATGATGCTCCTCCAAAGAAAACAGTTGAATTTGAAGAAGCTATAAGCTTTGTGAACAAGATAAAGAAACGATTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAACATGTACCGCAAAGAGCACAAGGATATTGGTGAGGTCTATAGTGAGGTTGCTACCCTTTTTGAGGACCATTCAGATTTACTTGAGGAGTTTACTAGATTCTTACCAGATACTTCTGCAACGCCTCCTACACAGCATGTTCCGTATGGTCGAAATTCATTTCCACGTTTTAGTGAGCGGGGTTCTACAGCACCCATGATACGGTCAATGCAAGTGGAAAAGAACCGTTATCGACGGGAAAGGCTTACTTCTCATGATCGTGATCCAAGTGTTGATCGTCCTGAACTGGACGATGACAAGGCACTAATGAAATCTCACAAGGAGCCGAGGAAGCGTGTTGATAAGGAAAGTAGGGATAGGAAAATTCCTGAGCAGGATGACAGAGAACATGATCATGATAATAACAGGGATTTAAAATCACGATTTTCTGACAAAAAGATATCTGTCAAGAAGGCTGAAGGTTTTGGGTTGGCAGCTGATTTTGCTTCTCATGATGACAAAGATACCTTAAAGAGCATGTATAACCAAGCATTCAGTTTTTGTGAGAAAGTTAAGGAAAAGTTGGGCAGTTCAGATGACTACCAAACATTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATAAAAAGGAATGATTTGCAGAATTTGGTGACTGACTTACTCGGAAAGTACCCTGATCTTATGGATGAGTTCAATGAGTTCTTGGAGCGGTGTGAAAATATTGATGGGTTCCTTGCTGGTGTCATAAGTAAAAAGTCATTAGGCAGTGATGGTCAATTGTCCAGAACTTTAAAGTTGGAGGACAGAGACAAAGACCAGAAGCGTGAGATGAATGGAGCTAAAGACAAGGAAAGACACCGGGAGAAATACTGGGGGAAATCCATTCAAGAACTTGACTTGAGTAACTGTCAACTTTGCACTCCAAGCTATCGACTTCTGCCGGAAGATTATCCAATTCCTGTGGCGAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAGTATGAAGAAAGCTTGTTTAGATGTGAGGATGACAGATTTGAGCTGGACATGTTATTAGAATCTGTAAGCTCAGCTGCCAAATGTGCAGAGGAGTTGTATAATACCATTAACGAAAATAAGATCAATATGGAGGCTCCAATCTGTATTGAAGATCACTTTAGCGCTCTAAATTTAAGGTGCATTGAACGCCTGTATGGAGACCATGGACTTGATGTACTGGACATATTACGAAAAAATCCACCTCATGCACTTCCTGTGATATTGACTCGTCTGAAGCAGAAACAAGAGGAGTGGAGTAGGTGTCGTTCTGATTTCAATAAGGTTTGGGCTGAAATTTATGCTAAAAACCACTACAAATCACTTGATCATCGGAGCTTCTATTTCAAGCAGCAAGATTCAAAGAACTTGAGCACTAAATCTTTGGTGGCTGAAATCAAAGAAATGAAAGCAAAGCAGCAGAAAGAATATGATATTCTTCAGGCCATCGCTGCTGGAAATAAACAGCCTTTAATTCCACATCTAGAGTTTGAATATTCGGATGTTGGGATTCATGAGGACCTATATAAACTTATTCGTTATTCATGTGAGGAGGTCTTCTCAAGTAAAGATATGTCAAATAAAATTATGAGACTTTGGACTACTTTTTTGGAGCTGATACTTGGTGTTCCCTCTCGTACTTATGGGACAGAAAATGTGGAGGACAGGAAAACTGGGCAACGTGTTGCCCATTTTGTTTCTTCAAATACAGGAGGTGATGGCAACTCCAATGGAGATTCTGCTCTAATGAATTCAAGGTTGCCAAAATCTGATAATGAAGTGGATGGTAGAGTAAACGAGGTAAAGAATGGTCAACAGTCTAGTTTAGCAGCCAATGACAGAGAAAATGGACCTGTTGACTGTGACCTTACTTGTAGAGACGATCATCTAATGGATACAGGGAAGAACAATGCAGATTGTAGCGAAAAAATCTCTGGGTTTAGTAAACAGGTTGCCTCTGATGAGCAATCAGCTATCAATAACACTTCAATTGCAGTTAGAGGAGAAACCAGCATGATCAAGACCAGCTTAGAAATTACTTCAGGCTTTGTGCTTAATCCAGGAAGACCAACTGCTACACTAGGCGGTGATGATGGGGTTGCCATTTCTCAGGGTGGTAGTGGACCTTTGATGGAGGGACGGGATATTGCTCCTCCCCTTCCATTAGCCAATGGAGTGCTAATTGAAAGCAATACAGTCAAAAGCCATGAAGAATCTGCCAGACCTTGCAAAGCTGAAAAGGAGGAGGGTGAATTATCACCTAATGTTGACTCAGAGGAGGATAATTTTCTTGGATATGGAGACTCTAGCGGGCAGGCGCTGCCCAAGTCAAAGCATAATATTGAAAGAGGTAATTATAAATCTAGAAATGGGGAGGAAGAATGCTGTCCAGATGCTGGAGGTGATAATGGTGCGGATGCTGATGATGAGGACAGTGATAATGTTTCTGAAACTGGTGAAGATGCCTCAGGTAGTGAGTCTGCTGGTGATGCATGCTCTCGGGAAGAGCATGAGGAGGATGAAGATATGGAACGTGATGATGTTGAGGGTAAGGCTGAGAGTGAAGGTGAAGCGGAGGGCATATGTGATGCGCAATGTGCTGGAGGAGAGGGCTCATCATTGCCATTATCAGAAAGGTTCCTTTTGTCAGTAAAGCCTCTCACAAAGCGTGTTTCCACACTTTCACTCGTTGATGAAAGAAATAATTCTAGGGTTTTCTATGGAAATGATGATTTTTTTGTTCTTTTTAGGCTTCATCAAATACTTTATGAAAGGATCTCATTAGCGAAAAAATATTCACTGAGTGCCGAACCAAAATGGAAAACAACAAAGGAGGCTTCTTCCCCAGATCCTTATTCAAGATTTATGAATGCGCTTTACAACTTGCTTGATGGCTCTGCTGACAATGTAAAATTTGAAGATGAATGCCGAGCTATAATTGGAAACCAGTCGTATATATTGTTTACATTGGACAAGTTGATATATAAGTTGATCAGACAGCTTCAAACAGTTGTAACAGATGAGATAGACAATAAACTTCTCCAATTATATGAGTATGAAAAGTCGCGGAAACCGGGGAAATTAGCTGATTCAGTCTATTATGCAAATGCACGTGTCATCCTTCATGATGAGAATATATATCGGTTTGAATGTTCATTTACTCCCTCTCGAGTGTTGGTTCAGCTGATGGACAGTATGAATGAAAAGCCTGAGGTGTTTGCTGTTTCAATTGATCCAAATTTTTCCTTTTATCTGTATAATGATTTTCTGTCTGTCTCTCCTGGTAAAAAGGAACCTCATGGCATTATGCTGCAAAGAAACAAGCGCAGACATAGAGATCTAGATGAACTTACATCTATGTGTATAGCCATGGAAAGTGTTAAAATAATAAATGGATTGGAATGTAAGATAGCTTGCAACTCGTCCAAGATCTCCTATGTTCTGGACACGGAAGATTTTTTCTTCCGCCCCAACAAGCAAAGAAGAACATCATCGTCAGGGACCGCATCTTCCCGGCATCATCGAGCTAGACAGGAAAGATTTCTCAGATTCTTATCAGTTTCATAA 4104 0.4077 MGSSRGDSYGQSQIPGGGGVGGGATSQKLTTNDALSYLKEVKDMFHDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDDAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFEDHSDLLEEFTRFLPDTSATPPTQHVPYGRNSFPRFSERGSTAPMIRSMQVEKNRYRRERLTSHDRDPSVDRPELDDDKALMKSHKEPRKRVDKESRDRKIPEQDDREHDHDNNRDLKSRFSDKKISVKKAEGFGLAADFASHDDKDTLKSMYNQAFSFCEKVKEKLGSSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKYPDLMDEFNEFLERCENIDGFLAGVISKKSLGSDGQLSRTLKLEDRDKDQKREMNGAKDKERHREKYWGKSIQELDLSNCQLCTPSYRLLPEDYPIPVASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKCAEELYNTINENKINMEAPICIEDHFSALNLRCIERLYGDHGLDVLDILRKNPPHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEMKAKQQKEYDILQAIAAGNKQPLIPHLEFEYSDVGIHEDLYKLIRYSCEEVFSSKDMSNKIMRLWTTFLELILGVPSRTYGTENVEDRKTGQRVAHFVSSNTGGDGNSNGDSALMNSRLPKSDNEVDGRVNEVKNGQQSSLAANDRENGPVDCDLTCRDDHLMDTGKNNADCSEKISGFSKQVASDEQSAINNTSIAVRGETSMIKTSLEITSGFVLNPGRPTATLGGDDGVAISQGGSGPLMEGRDIAPPLPLANGVLIESNTVKSHEESARPCKAEKEEGELSPNVDSEEDNFLGYGDSSGQALPKSKHNIERGNYKSRNGEEECCPDAGGDNGADADDEDSDNVSETGEDASGSESAGDACSREEHEEDEDMERDDVEGKAESEGEAEGICDAQCAGGEGSSLPLSERFLLSVKPLTKRVSTLSLVDERNNSRVFYGNDDFFVLFRLHQILYERISLAKKYSLSAEPKWKTTKEASSPDPYSRFMNALYNLLDGSADNVKFEDECRAIIGNQSYILFTLDKLIYKLIRQLQTVVTDEIDNKLLQLYEYEKSRKPGKLADSVYYANARVILHDENIYRFECSFTPSRVLVQLMDSMNEKPEVFAVSIDPNFSFYLYNDFLSVSPGKKEPHGIMLQRNKRRHRDLDELTSMCIAMESVKIINGLECKIACNSSKISYVLDTEDFFFRPNKQRRTSSSGTASSRHHRARQERFLRFLSVS 1367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1761 1367 ProSiteProfiles PAH domain profile. 111 181 IPR003822 GO:0006355
Alju03g1761 1367 Gene3D Paired amphipathic helix 311 384 IPR036600 GO:0006355
Alju03g1761 1367 SUPERFAMILY PAH2 domain 316 382 IPR036600 GO:0006355
Alju03g1761 1367 FunFam Paired amphipathic helix protein Sin3 33 95 - -
Alju03g1761 1367 Pfam C-terminal domain of Sin3a protein 1085 1333 IPR031693 -
Alju03g1761 1367 MobiDBLite consensus disorder prediction 744 766 - -
Alju03g1761 1367 Gene3D Paired amphipathic helix 110 182 IPR036600 GO:0006355
Alju03g1761 1367 Pfam Paired amphipathic helix repeat 134 178 IPR003822 GO:0006355
Alju03g1761 1367 Pfam Paired amphipathic helix repeat 50 94 IPR003822 GO:0006355
Alju03g1761 1367 Pfam Paired amphipathic helix repeat 335 379 IPR003822 GO:0006355
Alju03g1761 1367 Pfam Sin3 family co-repressor 450 540 IPR013194 -
Alju03g1761 1367 MobiDBLite consensus disorder prediction 910 1044 - -
Alju03g1761 1367 FunFam Paired amphipathic helix SIN3-like protein 110 181 - -
Alju03g1761 1367 MobiDBLite consensus disorder prediction 982 996 - -
Alju03g1761 1367 MobiDBLite consensus disorder prediction 408 430 - -
Alju03g1761 1367 MobiDBLite consensus disorder prediction 913 931 - -
Alju03g1761 1367 SUPERFAMILY PAH2 domain 108 180 IPR036600 GO:0006355
Alju03g1761 1367 MobiDBLite consensus disorder prediction 744 774 - -
Alju03g1761 1367 Gene3D Paired amphipathic helix 33 95 IPR036600 GO:0006355
Alju03g1761 1367 ProSiteProfiles PAH domain profile. 27 97 IPR003822 GO:0006355
Alju03g1761 1367 SUPERFAMILY PAH2 domain 23 96 IPR036600 GO:0006355
Alju03g1761 1367 PANTHER SIN3B-RELATED 27 1229 IPR039774 GO:0003714
Alju03g1761 1367 FunFam Paired amphipathic helix protein SIN3 310 384 - -
Alju03g1761 1367 MobiDBLite consensus disorder prediction 179 283 - -
Alju03g1761 1367 SMART hdac_interact2seq4b 446 546 IPR013194 -
Alju03g1761 1367 ProSiteProfiles PAH domain profile. 313 382 IPR003822 GO:0006355
Alju03g1761 1367 MobiDBLite consensus disorder prediction 959 975 - -
Alju03g1761 1367 MobiDBLite consensus disorder prediction 1 25 - -
Alju03g1761 1367 MobiDBLite consensus disorder prediction 215 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1761 Alju-ChrAlju03 45748532 45758649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1761 14 130 WRKY Transcription Factor Family AT4G12020 51.695 6.01e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Alju03g1761 Sin3a_C 7.6e-55 No_clan