Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1760 ATGAGTTGGGGCTCGGATGGTAAGACCGAGGTCATGAAGAATAAGAAAAGCAATGGGTCTGTTGGATCCATTTTCATGCATGCCGATTCCCAAGATTGGTTTTTGATGGTTCTTGGTGTGTTGGGGTCTTTCGGCGACGGCTTCACGGGGCCTACTGTGTTGTTTATTAGTAGCCGCTTGATGAACAATATAGGAGGGGCCTCGTCTCAAATGGATGTATCTGCTTTTGTTCATAACTCTAATGAGAACGCGGTGGCTCTATTATATTTGGCCTGTGGCTCATTTTTAGCATGCTTCCTCGAGGGATATTGTTGGACGAGAACAGGAGAGAGACAAGCAGCGAGAATGAGATCCAGGTATTTGAGAGCAATGCTAAGACAAGAAGTTGCATACTTTGATTTGCAAGTTACAAGCACGGCCGAGGTCATCACCAGCGTCTCTAACGACAGCATCGTAATTCAAGATTTTCTCAGCGAAAAGGTTCCAAACTTGTTGACGAATCTCTCTATGTTCGTTGCGAGCTACGTTGTAGCCTTTTCAATGTTCTGGAGATTGGCGATTGTAGCCTTACCTTTCGTGGTTCTTCTAGTAATCCCTGGTTTAATGTACGGAAGGACATTAACGGGGTTGGCTAGCAAGATCAGGGACGAGTATAACCAGGCAGGTGCAATCGCAGAGCAAGCAATATCTTCCATCAGAACCGTCCATTCCTTTGTCGGCGAAACCAAAACCATATCTGCTTTCTCCTCTGCTTTACAGGGTTCAGTCAAGCTGGGTCTAAAACAGGGCCTAGCTAAAGGCTTAGCCATAGGAAGCAACAGTATTGTGTTCGTCATATGGTCCTTCATTTGCTATTATGGTAGCAGACTCGTCATGTACCACGGCGCTCAAGGTGGCACCGTCTTCGCCGTCGGAGCAGCCATGGCTCTCGGTGGATTATCGCTGGGAGCGGGTTTATCCAACATGAAGTACCTGTCGGAAGCGAGTTCAGCAGGGGAAAGAATAATGGAGGTGATAAAGAGAATTCCCAAGATTGACTCAGAGAACATGGAAGGTGAGATTCTGGAGAGAATTCATGGGGAAGTGGAGTTCGATCGAGTAGAGTTCGCATACCCATCGAGGCCAGACAGCGTTATTCTGAGGGATTTTAGCATAAAGATTCCGGCGGGGAAGACGGTGGCGCTGGTGGGTGGGAGTGGATCAGGGAAGTCGACGGCGATATCACTGTTGCAGAGATTTTACGACCCAATTGGAGGAGAAATACGTGTGGACGGGGTGGGAATTAAGAGGGTGCAGCTAAAGTGGATGAGGTCGAAGATGGGACTGGTGAGCCAAGAGCCGGCTCTGTTCGCCACAAGCATAAAAGAGAACATACTGTTTGGGAAAGAGGACGCGAGTGAGGATGAGATTGTGGAGGCTGCCAAGGCTTCCAACGCTCATGATTTTATCTCTCAGTTGCCTCTGGGATACGATACCCAGGTGGGTGAAAAAGGCGTTCAAATGTCGGGAGGACAAAAACAGAGGATTGCTATTGCGCGGGCACTGATAAAAAAACCACGAATCCTCCTTCTCGATGAAGCAACAAGTGCTCTAGACAATGAATCCGAACGAGTTGTCCAAGAAGCTCTGGACAACGCAGCTGTTGGACGCACCACCATCATCGTCGCTCACCGCCTATCTACCATTCGGAACGCCGACGTCATTGCCGTCCTTCAAAACGGTAGCCTCATAGAAATGGGATCGCATGATGAGCTGATCGAAAACGAAAATGGGCTTTACACATCTCTGGTTCGTCTCCATCAAACAGAGAAATCTAGAACAATTCAAGAGGATACCGTCGGCGTCACTTCTACCTCTTCCACCACCGTATCAGATAGGGACATGAACAACACAAGCAGCCGAAGATTATCTCTCGTGCCTCGATCTAACTCTGCAAATTCATTAGGACAGGTTCGAGTTTCAAGTGCCGATGAAGAAACCAATGTGGCTACAGAAGAAAAGAAGCTCCCTGTTCCCTCGTTTCGGAGGTTGCTTGCCCTGAATCTCCCAGAATGGAAGCAGGCAACTTTAGGGTGTTTCAGTGCGTTTCTGTTCGGTGCAATTTACCCATTGTTCTCATTCTCAATGGGGTCAATGGTTTCTACTTTTTTTCTAAAAAACCACGACGAGATTAAAAACAAGATGAAGGTTTATGCGTTTTGCTACCTGGGTTTATTGGCCTCGTCATTGATTACTAGCATAAGCCAGCACTATAGTTTCGCCTACATGGGTGAATACTTGACCAAAAGGATAAGAGAGAGAACGTTTTCAAAGATACTCACATTTGAAGTTGGTTGGTTTGATCAGCCCGAAAATACAAGTGGTGCGGTTTGCTCTAGACTCGCCAAAGATGCCAATGTGGTGAGGTCTCTAATAGGAGATAGGATGTCTCTGTTGATACAAACTTTCTCCACTGTGATAATTGCTTGCACAATGAGCCTAGTGATTTCGTGGAGGTTCGCCATTGTTATTATTGCTGTTCAGCCCCTAATTGTAATCAGCTACTATACGAGGAGGGTCCTACTCAAGAGCATGACCAACAAGGCTACTAAGGCCCAAAATGAATGCAGCAAGCTAGCCGCAGAAGCCGTTTCCAACCTACGTATAGTTACAGCCTTCTCTTCCCAGGGCAGAATCCTCAAAATGCTCGAAAAAGCCCAAGAAGGCCCAAGGCAAGAGAGCTTTAGGCAGTCTTGGTTTGCTGGTATTGGGCTTGCTTTCTCACAGAGTATCACGTCCTGTACTTGGGCCTTAGACTTTTGGTATGGGGGGAAGCTGATGTCCACTGGTCTAATCAAAGCCGAAGCACTTTTTAAAACATTCATGGTACTAATGGGCACAAGCCGCGTCATTGCAGATGCCGGAAGCATGACTTCCGACATTGCTAAAGGCGCAGATTCTTTGGGCTCTCTCTTCGCAGTTCTCGACCGCCACACAAAAATTGACCCCGATAATCAAAACGGGTACAAGCCCGATAAACTCATGGGTCTAATAGAATTTCATGATATCCGTTTCGCGTACCCGGCCCGACCCAACGACATGATATTTCGGGGGTTTTCCATGAGAATGGAAGCGGGGAAATCAACGGCATTGGTGGGTCAAAGTGGGTGTGGGAAGTCAACCATCATAGGATTAATCGAGAGATTCTACGATCCATTAGAAGGGACAGTGAGTATAGACGGGAGAGACATAAAGTCATACCACCTTAGGAACTTAAGAGAGCACATAGCACTAGTGAGCCAAGAACCGACGTTATTTGCAGGGAGCATAAAGGAGAATATAGCATACGGAGCTAGGGACAACGTTGACGAAGCAGAGATTGTTGAGGCAGCTAAAGTGGCTAATGCTCATGAATTCATATCAAGCTTGAGGGAGGGATATGAGACATGGTGTGGGGAGAGAGGAGTCCAACTATCAGGTGGTCAGAAGCAGAGAATAGCAATAGCGAGAGCGATAGTGAAGAAGCCGGAGGTGTTGCTGCTAGATGAAGCGACTAGTGCTTTAGATAACCAGTCGGAGAGGGCGGTGCAAGAAGCTTTGGAGCGTGTTATGGTGGGGAGGACAAGCGTGGTGGTGGCTCATAGGTTGAGCACCATTCACAAGTGTGATGTGATTGCAGTGTTAGAGAAGGGGAAGGTGGTGGAGAAAGGGACCCACTCGTCCTTGCTGGCTAAGGGACCAGGTGGTGCTTATTATGCTCTGGTTAGCCTCCAAAGGAGGCATTCCAGTTCCATTAACCAACCCACCAGCTGA 3792 0.476 MSWGSDGKTEVMKNKKSNGSVGSIFMHADSQDWFLMVLGVLGSFGDGFTGPTVLFISSRLMNNIGGASSQMDVSAFVHNSNENAVALLYLACGSFLACFLEGYCWTRTGERQAARMRSRYLRAMLRQEVAYFDLQVTSTAEVITSVSNDSIVIQDFLSEKVPNLLTNLSMFVASYVVAFSMFWRLAIVALPFVVLLVIPGLMYGRTLTGLASKIRDEYNQAGAIAEQAISSIRTVHSFVGETKTISAFSSALQGSVKLGLKQGLAKGLAIGSNSIVFVIWSFICYYGSRLVMYHGAQGGTVFAVGAAMALGGLSLGAGLSNMKYLSEASSAGERIMEVIKRIPKIDSENMEGEILERIHGEVEFDRVEFAYPSRPDSVILRDFSIKIPAGKTVALVGGSGSGKSTAISLLQRFYDPIGGEIRVDGVGIKRVQLKWMRSKMGLVSQEPALFATSIKENILFGKEDASEDEIVEAAKASNAHDFISQLPLGYDTQVGEKGVQMSGGQKQRIAIARALIKKPRILLLDEATSALDNESERVVQEALDNAAVGRTTIIVAHRLSTIRNADVIAVLQNGSLIEMGSHDELIENENGLYTSLVRLHQTEKSRTIQEDTVGVTSTSSTTVSDRDMNNTSSRRLSLVPRSNSANSLGQVRVSSADEETNVATEEKKLPVPSFRRLLALNLPEWKQATLGCFSAFLFGAIYPLFSFSMGSMVSTFFLKNHDEIKNKMKVYAFCYLGLLASSLITSISQHYSFAYMGEYLTKRIRERTFSKILTFEVGWFDQPENTSGAVCSRLAKDANVVRSLIGDRMSLLIQTFSTVIIACTMSLVISWRFAIVIIAVQPLIVISYYTRRVLLKSMTNKATKAQNECSKLAAEAVSNLRIVTAFSSQGRILKMLEKAQEGPRQESFRQSWFAGIGLAFSQSITSCTWALDFWYGGKLMSTGLIKAEALFKTFMVLMGTSRVIADAGSMTSDIAKGADSLGSLFAVLDRHTKIDPDNQNGYKPDKLMGLIEFHDIRFAYPARPNDMIFRGFSMRMEAGKSTALVGQSGCGKSTIIGLIERFYDPLEGTVSIDGRDIKSYHLRNLREHIALVSQEPTLFAGSIKENIAYGARDNVDEAEIVEAAKVANAHEFISSLREGYETWCGERGVQLSGGQKQRIAIARAIVKKPEVLLLDEATSALDNQSERAVQEALERVMVGRTSVVVAHRLSTIHKCDVIAVLEKGKVVEKGTHSSLLAKGPGGAYYALVSLQRRHSSSINQPTS 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1760 1263 Pfam ABC transporter transmembrane region 37 304 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Alju03g1760 1263 Pfam ABC transporter transmembrane region 690 958 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Alju03g1760 1263 SUPERFAMILY ABC transporter transmembrane region 30 346 IPR036640 GO:0005524|GO:0016020
Alju03g1760 1263 FunFam ABC transporter B family member 1 23 359 - -
Alju03g1760 1263 FunFam ABC transporter B family member 4 1001 1257 - -
Alju03g1760 1263 MobiDBLite consensus disorder prediction 612 634 - -
Alju03g1760 1263 FunFam Putative ABC transporter B family member 8 654 999 - -
Alju03g1760 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 599 IPR027417 -
Alju03g1760 1263 Pfam ABC transporter 380 529 IPR003439 GO:0005524
Alju03g1760 1263 CDD ABC_MTABC3_MDL1_MDL2 362 599 - -
Alju03g1760 1263 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 37 327 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Alju03g1760 1263 SMART AAA_5 389 575 IPR003593 GO:0016887
Alju03g1760 1263 SMART AAA_5 1038 1231 IPR003593 GO:0016887
Alju03g1760 1263 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 690 976 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Alju03g1760 1263 Gene3D - 1001 1260 IPR027417 -
Alju03g1760 1263 PANTHER ABC TRANSPORTER B FAMILY 8 701 IPR039421 -
Alju03g1760 1263 Gene3D ABC transporter type 1, transmembrane domain 644 999 IPR036640 GO:0005524|GO:0016020
Alju03g1760 1263 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1011 1248 IPR003439 GO:0005524
Alju03g1760 1263 Gene3D - 352 601 IPR027417 -
Alju03g1760 1263 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524|GO:0016887
Alju03g1760 1263 CDD ABC_6TM_Pgp_ABCB1_D1_like 36 335 - -
Alju03g1760 1263 Coils Coil 855 875 - -
Alju03g1760 1263 CDD ABC_6TM_Pgp_ABCB1_D2_like 678 994 - -
Alju03g1760 1263 ProSitePatterns ABC transporters family signature. 1151 1165 IPR017871 GO:0005524|GO:0016887
Alju03g1760 1263 FunFam ABC transporter B family member 4 352 607 - -
Alju03g1760 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1001 1251 IPR027417 -
Alju03g1760 1263 CDD ABC_MTABC3_MDL1_MDL2 1011 1251 - -
Alju03g1760 1263 Gene3D ABC transporter type 1, transmembrane domain 24 607 IPR036640 GO:0005524|GO:0016020
Alju03g1760 1263 Pfam ABC transporter 1031 1179 IPR003439 GO:0005524
Alju03g1760 1263 SUPERFAMILY ABC transporter transmembrane region 668 990 IPR036640 GO:0005524|GO:0016020
Alju03g1760 1263 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1760 Alju-ChrAlju03 45739193 45744818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1760 24 1252 Calmodulin-binding Proteins AT2G36910 44.220 0.0 1043