Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1736 ATGATCAGATTAACAGCAACGGAGGCATGGGAAAATAAGATAATGGCAGAAAGTACAGCTAGAGTTATGCTACTGTTAATGGCTACCTTAGCCATTACAGTTCCATGCCTCGTCAACGCTAACATCGGAGAGTTCGACGATTATCTCCTCGAAAGAGCCAAGGAGGCCCGAAGAATGGCTCTTGAAGCATACGAACCAGACCCTTTGAACGTCACTTCTGAGCTCAACACGCACGTTCATCTGGCGATGAATGAAGCCAACATTATAATCAACAACCATACTAGAGGGAGGGACCTTGGGGAGAGGAAGAGAGGACCGTGCATGGCCACCAACCCAATCGATCGATGCTGGAGATGCGACAGAAACTGGGAGATGAATCGCTTTAAGTTAGCCACATGTGCGATGGGCTTCGGCCGTAAAACCACCGGCGGGTTGGGCGGTAAGATCTACGTCGTGACGGATCCTTCCGACGCTGACGTGGCTAACCCGAAACCCGGAACTCTGAGGTACGGAGCGATTCAGAAAGAGCCATTGTGGATTATATTCGCGCACAGCATGGTGATCAAGTTGCAACAGGAGCTGATGATTAATTCCGACAAGACGATTGACGGACGGGGAGCCAATATTCAGATAAAGAGCGGCGGCGGCCTCACTCTGCAATTCGTTAATAACGTCATCATCCACAACCTTCGCATTCGCAATATCAAAGCTAAGAAGGGTGGTATGGTAAGGGACGCCCCAGACCATATCGGGCTCAGAACCAGAAGCGACGGTGACGCCATCAGTCTCTTCGGTTCCACCAACATCTGGATCGATCACATTTCCATGTCCAACGCTGACGATGGGCTGATCGACGCCATCATGGGTTCTACCGCCGTTACCATATCAAATTGCCACATGACCAGACACAACGATGTGATGCTGTTCGGAGCCGGAGACGTGTATGTACAGGACAAGTTGATGCAGATAACGGTGGCGTTCAACCACTTCGGGAACGGACTGATACAGAGGATGCCGAGATGCAGACATGGGTGGTTCCATGTGGTGAACAACGACTACCATAACTGGATAATGTATGCCGTCGGAGGAACGGCGAATCCGACCATACTTAGCCAAGGAAACCGATTCAGTGGTCCGAACAATGTGGCAGCGAAGCAGGTTACGAACAGAGTGGGTGTGCCGCCATTTTTGTGGAAAGACTGGCGGTGGCAGTCGGAGGGAGACGAGTTTGTGAACGGAGCTTTTTTCGTACCATCGGGAATACCTATAACTTCAACTCCAACTAATTTCGATAAAGATAATTTGATACAACCCAGACCTGGGAACGAAGCTCCCCTGATAGCCCGCTATTCGGGTCAACTCAATTGCAGGGCCGGCAAGCCTTGTTAG 1389 0.5054 MIRLTATEAWENKIMAESTARVMLLLMATLAITVPCLVNANIGEFDDYLLERAKEARRMALEAYEPDPLNVTSELNTHVHLAMNEANIIINNHTRGRDLGERKRGPCMATNPIDRCWRCDRNWEMNRFKLATCAMGFGRKTTGGLGGKIYVVTDPSDADVANPKPGTLRYGAIQKEPLWIIFAHSMVIKLQQELMINSDKTIDGRGANIQIKSGGGLTLQFVNNVIIHNLRIRNIKAKKGGMVRDAPDHIGLRTRSDGDAISLFGSTNIWIDHISMSNADDGLIDAIMGSTAVTISNCHMTRHNDVMLFGAGDVYVQDKLMQITVAFNHFGNGLIQRMPRCRHGWFHVVNNDYHNWIMYAVGGTANPTILSQGNRFSGPNNVAAKQVTNRVGVPPFLWKDWRWQSEGDEFVNGAFFVPSGIPITSTPTNFDKDNLIQPRPGNEAPLIARYSGQLNCRAGKPC 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1736 462 PRINTS Pollen allergen Amb family signature 133 150 IPR018082 -
Alju03g1736 462 PRINTS Pollen allergen Amb family signature 193 209 IPR018082 -
Alju03g1736 462 PRINTS Pollen allergen Amb family signature 401 425 IPR018082 -
Alju03g1736 462 PRINTS Pollen allergen Amb family signature 337 356 IPR018082 -
Alju03g1736 462 PRINTS Pollen allergen Amb family signature 359 378 IPR018082 -
Alju03g1736 462 PRINTS Pollen allergen Amb family signature 157 182 IPR018082 -
Alju03g1736 462 PRINTS Pollen allergen Amb family signature 433 456 IPR018082 -
Alju03g1736 462 PRINTS Pollen allergen Amb family signature 257 278 IPR018082 -
Alju03g1736 462 Gene3D - 110 455 IPR012334 -
Alju03g1736 462 Pfam Pectate lyase 192 376 IPR002022 -
Alju03g1736 462 Pfam Pectate lyase, N terminus 41 95 IPR007524 GO:0030570
Alju03g1736 462 SMART amb_all 185 382 IPR002022 -
Alju03g1736 462 SUPERFAMILY Pectin lyase-like 111 429 IPR011050 -
Alju03g1736 462 PANTHER PECTATE LYASE 18-RELATED 56 460 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1736 Alju-ChrAlju03 45505401 45507141 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1736 22 462 Polysaccharide Lyase AT1G14420 56.140 9.26e-178 504