Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1735 ATGTCACTTGTTAGAATTGCGTTGTTTGTAATCGCCTTAGCCATTACAGTTCCATGCCTCGAGGCTAACATCGGAGAGCTTGACGAGTACCTCCAAGAAAAAGCAAAGCAAGCCCACCGAGCAGCTCTCGAAGCCTACGAGCCCGATCCTTTAAATGTCACGTCGGAGCTCAACTTCCATGTTCACCTTGCGATGGATGAGGTCAACACTAACAGCACTAGAGGGAGGGATCTGAGGGAGAAAAAGAATCGCAATAAAAGATGCGAAGCCACCAACCCAATCGACCGGTGCTGGAGATGCGATCCCAATTGGGAGAAGAATCGCTTTAAGTTAGCCGGCTGCGCCATGGGTTTCGGCCGCAAGGCCACCGGAGGTTTGGGTGGTCCGATCTACGTCGTCACAGATAGTTCCGACGACGACGTGGTGAACCCGAAGCCCGGAACTCTGAGGCACGGAGTGATCCAGAAGGGGCCTCTGTGGATCATATTCGGCCGCAGCATGGTGATCAAGTTGAAGGAGGAGTTGCTGGTGTCATCGGACAAGACAATCGACGGTCGTGGAGCCAATGTCGCGATCAGAAACGGCGCTGGCATCACTTTGCAGTTCGTCAATAACGTCATCATCCACAATCTTCGCATTCGCAACATCAAACCTAAGAACGGGGGTATAATTAGAGATTCCGTCGACCACCTTTCGCTCCGAACCAGAAGTGACGGCGACGCCATCGGCCTCTTCGGTGCGACCAATATTTGGATCGACCATATCTCCCTCGCCAACGCCGAGGACGGCCTCATCGATGTCATCATGGCTTCCACCGGCGTGACCATCTCAAATTGCCACATGACCAGACACAACGATGTGATGCTGTTCGGAGGTGGTGAGGTGTATCGTCAGGACAAGGTGATGCAGGTAACGGTGGCGTTCAACCACTTTGGGAACGGACTGATACAGAGGATGCCGAGATGCAGATATGGGTTCTTCCATGTGGTGAACAACGATTATACTCACTGGATAATGTATGCCATTGGAGGAAGCTCGGCGCCGACGATACTGAGCCAAGGAAACCGATTCATTGCTCCGAACAACGACGTGACGAAGCTGATCACGAACAGGGTGGGGACGCCGCCGTCGGAGTGGAAAGACTGGCAATGGCAATCGGAGATGGATCAGTTGGATAACGGAGCCATTTTCGTTCAATCGGGAAGTCCGATAACCTCAGTGGACAGAAGCAGTTTGATCCCACCAAGACATGGGATTGAAGCTCCATTGCTTGCAAGATATTCGGGTGCGCTCGCGTGCAGGGCTGGCAAGCGTTGTTAG 1320 0.5288 MSLVRIALFVIALAITVPCLEANIGELDEYLQEKAKQAHRAALEAYEPDPLNVTSELNFHVHLAMDEVNTNSTRGRDLREKKNRNKRCEATNPIDRCWRCDPNWEKNRFKLAGCAMGFGRKATGGLGGPIYVVTDSSDDDVVNPKPGTLRHGVIQKGPLWIIFGRSMVIKLKEELLVSSDKTIDGRGANVAIRNGAGITLQFVNNVIIHNLRIRNIKPKNGGIIRDSVDHLSLRTRSDGDAIGLFGATNIWIDHISLANAEDGLIDVIMASTGVTISNCHMTRHNDVMLFGGGEVYRQDKVMQVTVAFNHFGNGLIQRMPRCRYGFFHVVNNDYTHWIMYAIGGSSAPTILSQGNRFIAPNNDVTKLITNRVGTPPSEWKDWQWQSEMDQLDNGAIFVQSGSPITSVDRSSLIPPRHGIEAPLLARYSGALACRAGKRC 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1735 439 Pfam Pectate lyase, N terminus 23 74 IPR007524 GO:0030570
Alju03g1735 439 PANTHER PECTATE LYASE 18-RELATED 39 437 IPR045032 GO:0030570
Alju03g1735 439 Pfam Pectate lyase 172 357 IPR002022 -
Alju03g1735 439 Gene3D - 91 431 IPR012334 -
Alju03g1735 439 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Alju03g1735 439 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
Alju03g1735 439 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Alju03g1735 439 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Alju03g1735 439 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Alju03g1735 439 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Alju03g1735 439 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
Alju03g1735 439 SMART amb_all 166 363 IPR002022 -
Alju03g1735 439 SUPERFAMILY Pectin lyase-like 92 406 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1735 Alju-ChrAlju03 45498461 45499972 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1735 6 439 Polysaccharide Lyase AT1G14420 55.257 1.03e-179 508