Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1707 ATGGGAAGGCCGCCTTGTTGTGACAAAGAAGGTGTCAAGAAAGGACCTTGGACACCTGAAGAAGATATCTTGCTGGTGTCATACATACAGCAACATGGCCCAGGGAATTGGAGGGTTGTTCCCACCAATACAGGGTTGTCTCGGTGCAGCAAGAGTTGCCGACTTAGATGGACTAATTACCTGAGGCCAGGAATCAAGCGTGGCAACTTTACTGACCAAGAAGAGAAGATGATCATCCATCTTCAAGCTCTTTTGGGCAATAGATGGGCTGCGATAGCTTCGTACCTTCCACAGAGAACAGACAACGACATCAAAAATTATTGGAACACCAACTTGAAGAAGAAGCTCAAGAAAATGCAGACGGGTCTGGAAGGAGATAGCATGAGAGATGGGTTTTCAGGTTCGAACAGTACAATGCCTCGGGGCCAGTGGGAAAGGAGGCTTCAAACTGATATCCAAATGGCTAAGAGAGCTCTTCGAGATGCACTGTCACCTCATAAGCCTTCTGGTGCTTCATTTCAATCCAACACCTCTAATAATAATAATAATACACGCTCCTTCTCTTCCATTTCTGCAGCGAAACCAACCCAATCCATATGCTATGCGTCTACTGCTGACAACATAGCTCGTTTGCTCAAGGAATGGAAGAAGAATCCACCAAAGAAAAATCCCTCTCGCACTCCTAACTCCACAATGACTCAGAACGAACTCGGAAACTTGGCTGTTTGTAGCAAAGAAGCCCCAGACAAAGGAAACAGCTTTGAGACATGCGAGACGTTTGAGTCATTGTTTGGGTTGGAGTCTTTGGATTCTTCGAATTCTGAGTTTTCCCAATCTCTGTCTCCTGACCCTGAGCCTATAAGCACTACTCTTTTCCAAGATGAGAGCAAGCCGGAGAATGGTGCAGAATTGCCATTTTCTTTTCTTGAGAAATGGCTTTTAGATGAAGTTACTTTGCCAGGAATAAGTTAG 972 0.4516 MGRPPCCDKEGVKKGPWTPEEDILLVSYIQQHGPGNWRVVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTNLKKKLKKMQTGLEGDSMRDGFSGSNSTMPRGQWERRLQTDIQMAKRALRDALSPHKPSGASFQSNTSNNNNNTRSFSSISAAKPTQSICYASTADNIARLLKEWKKNPPKKNPSRTPNSTMTQNELGNLAVCSKEAPDKGNSFETCETFESLFGLESLDSSNSEFSQSLSPDPEPISTTLFQDESKPENGAELPFSFLEKWLLDEVTLPGIS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1707 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Alju03g1707 323 SMART sant 66 114 IPR001005 -
Alju03g1707 323 SMART sant 13 63 IPR001005 -
Alju03g1707 323 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Alju03g1707 323 MobiDBLite consensus disorder prediction 168 188 - -
Alju03g1707 323 MobiDBLite consensus disorder prediction 273 296 - -
Alju03g1707 323 CDD SANT 16 61 IPR001005 -
Alju03g1707 323 MobiDBLite consensus disorder prediction 122 143 - -
Alju03g1707 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Alju03g1707 323 MobiDBLite consensus disorder prediction 162 188 - -
Alju03g1707 323 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Alju03g1707 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Alju03g1707 323 Gene3D - 13 66 - -
Alju03g1707 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 235 - -
Alju03g1707 323 CDD SANT 69 111 IPR001005 -
Alju03g1707 323 Gene3D - 68 129 - -
Alju03g1707 323 MobiDBLite consensus disorder prediction 273 300 - -
Alju03g1707 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Alju03g1707 323 MobiDBLite consensus disorder prediction 215 234 - -
Alju03g1707 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Alju03g1707 323 FunFam MYB-related transcription factor 13 66 - -
Alju03g1707 323 FunFam Transcription factor MYB30 68 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1707 Alju-ChrAlju03 45294650 45295814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1707 1 316 MYB Transcription Factor Family AT5G62470 51.558 1.96e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju03g1707 Myb_DNA-binding 2.7e-15 CL0123