Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1679 ATGGAGAGATCTTCAGGAGTGAGAACTGGAAGATGGTGCAAAGAAGAAGATGATCTTCTCAAGGCCTGTGTTCTAAACTATGGTGAAGGAAACTGGCACCTTGTTCCTGAAAGATCAGGCTTGAAAAGGTGCAGAAAAAGCTGTAGGCTGAGGTGGTTAGACTATCTAAAACCAGATATCAAGAGGGGAGGCTTCTCTGAGGATGAAATTGATATGATGATCAGGCTTCACAGGCTCTTGGGAAACAGATGGTCAGTGATAGCTAGAATGCTTCCTGGAAGAACAGCAAATGGTGTGAAAAACTACTGGAACACCCATATGCGTGAGAAGGGACAACGTGGTTCATCTGATAAGGAGAGGGAGGTAGAAGAAAAAGTAGAGGATCAGACAACAGGCATTAGAAGCCACAGAACAACAGTAATAAGACCTCGAGCTTTGAGGTTATCGAGAAGCTCGTGGTCTTGGTGTAATAATAATAATAATAAGGAAGCTGGTTGTGAAGTTAGCGAAGACAATAGTACAAACAGTAGTGGCCTACATCATGATGGAGAGCGAAACCAGCAGGAGGTAGACGATGAGTCGATGGAGTGGTGGAAATGCTTGCTTTTTGATGACAGTGACAATATTATTGACAAGGTAGTAGGTCATCATGATCATCAACAAATTGGTTCATCATCATCTTCATCATCTACGTCCACGGATCAACATGACGCGTTTGATCAATCCTGGGATCATGATCAGCAACTTACTTGGATTGATGACTTTCCTCTACACGTCACTCTCATGGATTTTCTCGCTTAA 801 0.4295 MERSSGVRTGRWCKEEDDLLKACVLNYGEGNWHLVPERSGLKRCRKSCRLRWLDYLKPDIKRGGFSEDEIDMMIRLHRLLGNRWSVIARMLPGRTANGVKNYWNTHMREKGQRGSSDKEREVEEKVEDQTTGIRSHRTTVIRPRALRLSRSSWSWCNNNNNKEAGCEVSEDNSTNSSGLHHDGERNQQEVDDESMEWWKCLLFDDSDNIIDKVVGHHDHQQIGSSSSSSSTSTDQHDAFDQSWDHDQQLTWIDDFPLHVTLMDFLA 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1679 266 Gene3D - 64 138 - -
Alju03g1679 266 Gene3D - 2 61 - -
Alju03g1679 266 MobiDBLite consensus disorder prediction 217 238 - -
Alju03g1679 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Alju03g1679 266 MobiDBLite consensus disorder prediction 165 181 - -
Alju03g1679 266 MobiDBLite consensus disorder prediction 108 133 - -
Alju03g1679 266 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Alju03g1679 266 CDD SANT 11 56 IPR001005 -
Alju03g1679 266 MobiDBLite consensus disorder prediction 108 132 - -
Alju03g1679 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Alju03g1679 266 MobiDBLite consensus disorder prediction 219 237 - -
Alju03g1679 266 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Alju03g1679 266 CDD SANT 65 107 IPR001005 -
Alju03g1679 266 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 217 - -
Alju03g1679 266 SMART sant 8 58 IPR001005 -
Alju03g1679 266 SMART sant 61 109 IPR001005 -
Alju03g1679 266 MobiDBLite consensus disorder prediction 165 190 - -
Alju03g1679 266 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Alju03g1679 266 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Alju03g1679 266 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Alju03g1679 266 FunFam Myb transcription factor 9 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1679 Alju-ChrAlju03 45048607 45049984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1679 2 149 MYB Transcription Factor Family AT1G66370 52.703 8.57e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju03g1679 Myb_DNA-binding 4.2e-12 CL0123