Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1666 ATGGCAAGGAGGAGGAAGGCCATGGAAATAGAGGAAGACAGAAACATGAAATGGGATGAGATAATGAAGGAAGCTGAAGCACTGGGAGTGAGCAGAAGAGCAAGGAAGCGTTTTGTTGGAGTAAGACAAAGGCCTTCTGGAAGATGGGTAGCAGAAATTAAGGATACAATTCAGAAGATTAGGGTTTGGTTGGGAACTTTTGATACTGCAGAGGAAGCTGCCCGAGCTTATGATGAGGCTGCTTGTCTCCTTCGTGGTGTCAACACTAGGACCAATTTCTGGCCTTGTTCTTATTCTTCAAAAACCCCTGCTCTTTCCTCTAAGATCACCAATCTCCTCCTTCAGAGGCTCAAAGCAAGGAATAACACTTGCTCTGTTTCTTCTTCTTCTGATAATTCCTCCTCCTCCTCCTCTGTTTCTCCTCTCTCTGATCATCAGCAAGTTGATTTGCACAATGAAGAAGCAGATACTGATTTTTCTATTGACCAGTTGACTGATTGGCTTAATGATCCTGAAGATTACAGCGCAGGAAACAACAATGACTTTAATATGTTCACTGATCATAGTGCACAAGTTGAGTCCTTTACCAGTAGTCATGAATCATGTTTGACTGAAACAGAACAATGCAGGGTAAGAGAAATGGGGTCGGAAAATGATGGCAGGAATGTTGTTGCAGACTGCAGTTCAGGAGGGGAAAGAGAGGAAGAAAGTGAAGAAGAAGAGGAACAAGAAATCACGCATGTGGGTGTGGAGGATTTTGAGTTTGTGGACAAGGTTGCTCCTTCATGTTACTATTCACCGTTTGAGATGGCGGAAGAGATGGAGGAGCCAGTGGCGGTTGAGGCAGAGAGCTACGGCGGCGATGAGCCTTCGATGCTCAGAGCAGCCATGAAGAGGATGAAGTATGAGAGGAAGTTCTCAGCTTCTCTTTATGCATTTAATGGAATACCTGAATGCTTGAAGCTGAAGTTAGGAGGAGAAGGATCTGGAAACTCCAAGGCAAAAGGGGTTTCTGATCATTTAGCTAACCTTAAGGTGGCATGTAGCAGCAAGGAGAGATTCGAGGAAACTAAGGAGCACAAAGAAGAAGAACAAAACACATTGACATTAAATGAGTCTGAGAGTTCTTCATCTTATACTGCTACCAGTGTCGATGGTGAATTGTTGCTTTGGAATTCTCTGGATCTTCCTCCCATATGAGAATCTCCTAAACCAAATTTACTCTCTGAAAATTCAATGCTTTATTGA 1248 0.4343 MARRRKAMEIEEDRNMKWDEIMKEAEALGVSRRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGVNTRTNFWPCSYSSKTPALSSKITNLLLQRLKARNNTCSVSSSSDNSSSSSSVSPLSDHQQVDLHNEEADTDFSIDQLTDWLNDPEDYSAGNNNDFNMFTDHSAQVESFTSSHESCLTETEQCRVREMGSENDGRNVVADCSSGGEREEESEEEEEQEITHVGVEDFEFVDKVAPSCYYSPFEMAEEMEEPVAVEAESYGGDEPSMLRAAMKRMKYERKFSASLYAFNGIPECLKLKLGGEGSGNSKAKGVSDHLANLKVACSSKERFEETKEHKEEEQNTLTLNESESSSSYTATSVDGELLLWNSLDLPPIXESPKPNLLSENSMLY 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1666 415 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 307 - -
Alju03g1666 415 Coils Coil 351 371 - -
Alju03g1666 415 MobiDBLite consensus disorder prediction 216 241 - -
Alju03g1666 415 MobiDBLite consensus disorder prediction 355 381 - -
Alju03g1666 415 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Alju03g1666 415 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Alju03g1666 415 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Alju03g1666 415 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Alju03g1666 415 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Alju03g1666 415 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Alju03g1666 415 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Alju03g1666 415 MobiDBLite consensus disorder prediction 124 182 - -
Alju03g1666 415 MobiDBLite consensus disorder prediction 395 415 - -
Alju03g1666 415 FunFam ethylene-responsive transcription factor RAP2-11 36 95 - -
Alju03g1666 415 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Alju03g1666 415 MobiDBLite consensus disorder prediction 124 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1666 Alju-ChrAlju03 44983560 44986422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1666 31 113 AP2-EREBP Transcription Factor Family AT5G19790 71.084 1.31e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju03g1666 AP2 1.8e-14 CL0081