Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1646 ATGAATTTACTAGGGCAACTTATTCTCCATTATTGGGCCTCCTGCTCTTTCGCAAAAGGTCTTCCTTTGTTCCATTTCAACGCAAACTGCTGTTTTGCTATTAATCTTCATCACGTAATCGTAAACTGTCCATCTTCATCTTCTTCTCCTCCGCATCATTCTGTCCCCGTCCATACTCAGCCTCCTTATGAAATTGAAAATCCAATGGAACACGCCACTGTGCCTGAATTGCAGCCAAACCCAACGCCAGCGTCCCTTCCTTCTTACCCACCTGCTGTAGCCGCTTATTTTCCCGCATCCTACCCTCCCCATTACCAATTATACTTTCAAAACCCTAATCCTCCTTCTGCAGACCCTCAATCGTCAGCTGGAACCCAAGAATTTCATGGTGGCTCTGGTGCGGAACCTGGGTTGAACCCTCCTGGTGTTGCTTCCTATGCCCCCGTGACCTCCGACTCAGTTAGCCATCTGACCCATGAAGCCCATGCTAATTACTCATATGCTCACAACCCTGTTGCAGATTCGAGCTCCGCATACTATTATGATCCAAATGCTCAGAATTGGGCTGCCAGGGAGGCTGTTATGCAGTTCGGGGTGGACCCGGCTGGCTATGGAGCCGCTATCCCCGGGGCTTCAACTGGATCAGAGCAATTGGCTACTGCAAATACCAACTCGGCTTGGTGGACTACCACCACAACCCAGCCTCATGTAAATGGGGCTTGGAAGAAATCTAATAAACCTAAGAAACTGAAAATTAAGGTTGTCCAATCTGCATATTGTGAAGTTTGCAAGATAGATTGTACCAGCAAGGATGTTCTGGACCAACATAAGTTAGGAAAGAAGCACAAGAAGAACTTGGAGAAACTAAAAGAAGCATTAAGGCCGCCGCTACCACGACAAGTTCCTCTTCTGCCCGCCGCTTCATCTAATCCTGTGATAGGACCTCAACCGGAGGGGAACAAGAGCAAATCTGGTGGTGGGAGTAATAAAAAAAGGAAAGCAACTCAAACACCAGCAGATTTGGAGAACAAGAAAAAGAAGGTTCTTGAAGGTGGGGCTGCTGCAGAAGCAGTTAAAATATGTACTATTTGTAACGTGGTCTGTAATAGCGAGACGGTATTTAATTATCATCTTGCAGGGCAAAAGCATACTGCTATGTTGAAGAAACAAACTTCTTAA 1179 0.4631 MNLLGQLILHYWASCSFAKGLPLFHFNANCCFAINLHHVIVNCPSSSSSPPHHSVPVHTQPPYEIENPMEHATVPELQPNPTPASLPSYPPAVAAYFPASYPPHYQLYFQNPNPPSADPQSSAGTQEFHGGSGAEPGLNPPGVASYAPVTSDSVSHLTHEAHANYSYAHNPVADSSSAYYYDPNAQNWAAREAVMQFGVDPAGYGAAIPGASTGSEQLATANTNSAWWTTTTTQPHVNGAWKKSNKPKKLKIKVVQSAYCEVCKIDCTSKDVLDQHKLGKKHKKNLEKLKEALRPPLPRQVPLLPAASSNPVIGPQPEGNKSKSGGGSNKKRKATQTPADLENKKKKVLEGGAAAEAVKICTICNVVCNSETVFNYHLAGQKHTAMLKKQTS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1646 392 PANTHER ZINC FINGER PROTEIN 385B-LIKE 117 391 - -
Alju03g1646 392 Pfam Zinc-finger of C2H2 type 259 282 - -
Alju03g1646 392 Pfam Zinc-finger of C2H2 type 360 383 - -
Alju03g1646 392 MobiDBLite consensus disorder prediction 108 147 - -
Alju03g1646 392 MobiDBLite consensus disorder prediction 313 334 - -
Alju03g1646 392 Gene3D Classic Zinc Finger 329 391 - -
Alju03g1646 392 Gene3D Classic Zinc Finger 240 289 - -
Alju03g1646 392 SUPERFAMILY beta-beta-alpha zinc fingers 357 390 IPR036236 -
Alju03g1646 392 SMART ZnF_U1_5 255 289 IPR003604 GO:0003676|GO:0008270
Alju03g1646 392 SMART ZnF_U1_5 356 390 IPR003604 GO:0003676|GO:0008270
Alju03g1646 392 MobiDBLite consensus disorder prediction 108 128 - -
Alju03g1646 392 SMART c2h2final6 359 383 IPR013087 -
Alju03g1646 392 SMART c2h2final6 258 282 IPR013087 -
Alju03g1646 392 MobiDBLite consensus disorder prediction 290 344 - -
Alju03g1646 392 SUPERFAMILY beta-beta-alpha zinc fingers 254 290 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1646 Alju-ChrAlju03 44817957 44822333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1646 254 387 C2H2 Transcription Factor Family AT5G61190 32.836 4.13e-13 69.3