Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1597 ATGGGTTCTGTTTGTTGTTGTTTGAGTGCGGATGAATTTGAAGATTATTTAAATCGAAATAGTTCTGTATATAGGAATTGTGAGTGTCTCAATTGCTTCTTACGGAACTTTCTGAATGTGTATACAGCAATATTCCACAGAGGGGAAGTGCACTCGCTTCCTTCATCTATACAGGGGGCTGCATCTATGGCTTCTACAGCATCACTTGATAATTCGCTATCTGACATGTACCATTCTCCCCCAAGACCATTGCCTTATGATGTAGACCCCAGGCATTTCCGCTCTTCAAGACATGACAAAGGTTCTAGTCATCTGAATGAAGAGTCAGAACCTCTAAGAGGTGATGTAGATGGGGATCAAGAATCTTTAAGTTCAGGAGGCAAATGGAATGAATCTTCCTGTGAAGATGCATCAAAGGAATACAAATCTAAGTCCTCAGTGAGGCTCTCATCAGCAAAATATACAACTGGAGCTGGGCTTGTTTATGCATCATCAGAGGAGGAGGACGTATGCCCAACCTGTCTTGAAGAATACACTGAAGAGAACCCAAGGATATTGACAAAGTGCAGTCATCATTTTCATCTTAGTTGCATTTACGAATGGATGGAGAGAAGTGAAAGCTGTCCAGTTTGTGGGAAGGTGATGGTATTCGATGAAACTTAA 663 0.4148 MGSVCCCLSADEFEDYLNRNSSVYRNCECLNCFLRNFLNVYTAIFHRGEVHSLPSSIQGAASMASTASLDNSLSDMYHSPPRPLPYDVDPRHFRSSRHDKGSSHLNEESEPLRGDVDGDQESLSSGGKWNESSCEDASKEYKSKSSVRLSSAKYTTGAGLVYASSEEEDVCPTCLEEYTEENPRILTKCSHHFHLSCIYEWMERSESCPVCGKVMVFDET 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1597 220 CDD RING-H2_AIRP1-like 167 215 - -
Alju03g1597 220 MobiDBLite consensus disorder prediction 72 133 - -
Alju03g1597 220 MobiDBLite consensus disorder prediction 85 117 - -
Alju03g1597 220 Pfam RING-H2 zinc finger domain 166 211 IPR024766 GO:0008270
Alju03g1597 220 FunFam E3 ubiquitin-protein ligase At3g02290-like 148 218 - -
Alju03g1597 220 SMART ring_2 171 211 IPR001841 -
Alju03g1597 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 217 IPR013083 -
Alju03g1597 220 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 60 219 - -
Alju03g1597 220 ProSiteProfiles Zinc finger RING-type profile. 171 211 IPR001841 -
Alju03g1597 220 SUPERFAMILY RING/U-box 166 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1597 Alju-ChrAlju03 44418731 44421926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1597 1 219 C3H Transcription Factor Family AT5G38895 59.091 4.62e-97 284