LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju03g1591	ATGGTGCATTTTCCGGCCGTTCTTTTTTATGCGTTTAGATTTAGAATTAATTTTAGAGGCATTCTACTTTCTGTCACGAGTGACCACCAAATCCGCGTTGCTTCGGAAGCAGATCCTCTCATCCGTTGCTTCCTTTATTTCCTCCCCGCTCCAACTCACGCTCGCTCGTACATTTTGAGTTTCCTCTTTGGGTTCCTTCTTCCTCCTCTGAGTCGTTACTTAATCCCTGTGTTTTACTCTGCTTCCAAAAGACGCATACAATTAGACTGGACGGAGTTCAAGTTCATGATCGTGGTTCATGCAAAAATGGACCTCTCTAACACCAATCTTCTGCAAGATGATTTCATTGTTTACATCAAGAGAGGTCAAACAATGTTTCGCCAAGCTACTCTAGTTATCATTGGTGTCACAGTTGGCGTGGTCTTGGGAATTTTTATTGCCGCCCTTATATTTTTTGGCATAAGGTGGTATAAGAAGCATGCTCGTCTTACACTTTCTGCAAAAGAGAGTAGTTTAACCACTCTTCCAATACGCACTAATGGATTAGGAGCAAGCACTGACTTTAGCGCCTCTCTTACAAGTTCCATATCCAATTCAATGTCAGCAAATTTGCCAAGAAACTCCAATTTCTCTTGGTGGAGTCATCAGAAAAAAGATCGATTTTCTCTGACATCTGGCATTTCAAAGTACTCATACAAAGAAATTCAAAAGGCCACGCAGAATTTCACAACTATTTTAGGACAAGGATCATTTGGCACAGTTTACAAAGCCACAATGCCTACAGGAGAGGTGGTAGCTGTGAAGGTGCTTGATTCTAATTCTAAACAAGGGGAGAAAGAGTTCCAAACAGAGGTGCTTTTGCTGGGGAGATTGCATCATCGGAATCTTGTGAATTTAGTAGGATATTGTGTAGACAAAGGACACCGTATTCTGGTTTATGAGTTCATGAGCAATGGAAGTTTGTCAAACCTTCTATACGGTGAAGTAAAGGCTTTGAGTTGGAATGAAAGGCTTCAAATTGTTATTGATATTTCACATGGAATTGAATATCTTCATGAAGGAGCAGTCCCACCCGTTATACATCGTGATTTGAAGTCTGCCAATATACTGTTAGATCATTCAATGAGAGCTAAGGTTGCTGATTTTGGGTTGTCAAAGGAAGAGATCTTTGATGGCCGGAATTCAGGCCTTAAAGGAACATACGGCTACATGGACCCATCATACATTTCCACAAACACGTTCACAATGAAGAGTGACATCTACAGTTTTGGTATAATCATTTTTGAGCTCATTACAGCAATTCACCCACATCAAAATTTGATGGAATATATAAACCTTGCTGCAATGGATCATGATGGCATTGATGAGATACTTGACAAACAACTTGTAGGAAAATGCAACCTTGAAGAAGCAAGGCAGCTTGCTAAAATTGCTTACAAATGTTTGCACAGATCTCCTAGGAAACGCCCCTCCGTTGGTGAGGTTTCACAGGGCATATTGAGAATCAAACAAAGGCGCCTTATGAAAGATGCCTTGCCATTTGCGGGCAGTAACTTATCCAGAGCTTTGAGTCGAGTAGAGGATCAACAAGTTGAACTGAATAAGTTAACCAGCATGAAGCATAGAGAAACTGGATGA	1638	0.4084	MVHFPAVLFYAFRFRINFRGILLSVTSDHQIRVASEADPLIRCFLYFLPAPTHARSYILSFLFGFLLPPLSRYLIPVFYSASKRRIQLDWTEFKFMIVVHAKMDLSNTNLLQDDFIVYIKRGQTMFRQATLVIIGVTVGVVLGIFIAALIFFGIRWYKKHARLTLSAKESSLTTLPIRTNGLGASTDFSASLTSSISNSMSANLPRNSNFSWWSHQKKDRFSLTSGISKYSYKEIQKATQNFTTILGQGSFGTVYKATMPTGEVVAVKVLDSNSKQGEKEFQTEVLLLGRLHHRNLVNLVGYCVDKGHRILVYEFMSNGSLSNLLYGEVKALSWNERLQIVIDISHGIEYLHEGAVPPVIHRDLKSANILLDHSMRAKVADFGLSKEEIFDGRNSGLKGTYGYMDPSYISTNTFTMKSDIYSFGIIIFELITAIHPHQNLMEYINLAAMDHDGIDEILDKQLVGKCNLEEARQLAKIAYKCLHRSPRKRPSVGEVSQGILRIKQRRLMKDALPFAGSNLSRALSRVEDQQVELNKLTSMKHRETG	545

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju03g1591	545	Gene3D	Transferase(Phosphotransferase) domain 1	316	513	-	-
	Alju03g1591	545	FunFam	Calcium/calmodulin-regulated receptor-like kinase 2	316	522	-	-
	Alju03g1591	545	ProSitePatterns	Protein kinases ATP-binding region signature.	246	268	IPR017441	GO:0005524
	Alju03g1591	545	ProSiteProfiles	Protein kinase domain profile.	240	500	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju03g1591	545	Pfam	Protein kinase domain	244	496	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju03g1591	545	Gene3D	Phosphorylase Kinase; domain 1	206	315	-	-
	Alju03g1591	545	FunFam	Calcium/calmodulin-regulated receptor-like kinase 1	214	315	-	-
	Alju03g1591	545	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	128	504	-	-
	Alju03g1591	545	SMART	serkin_6	240	508	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju03g1591	545	SUPERFAMILY	Protein kinase-like (PK-like)	211	496	IPR011009	-
	Alju03g1591	545	CDD	STKc_IRAK	246	502	-	-
	Alju03g1591	545	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	359	371	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju03g1591	Alju-ChrAlju03	44395136	44401421	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju03g1591	226	495	Receptor kinase-like Gene Family	AT3G19300	41.935	2.21e-68	231

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-2	Alju03g1591		Pkinase	2.2e-50	CL0016