LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju03g1582	ATGCAAGCCAGAGAGGTTTCAGGACTGAATTATCAGTTTCAGGTCCATTCAAGTCCATGTCCATATCCATCACCTCATTACAGCTCTATACAGAACAATATATCCACATTCCAACTTCAAAGATTCGCCAATCAGCTGTATAATTTCCAGAACCCTCCTCAAGTTCAAGACTTTAGCCCACAATCGTCGTGTCTGAGCAGCAATTCAACTTCTGATGAGGCAGATGAGCAGCAACAGAACCTCATCATCAACGAGAGGAAACACAGGAGGATGATATCAAACAGAGAATCTGCTCGCAGGTCTCGCATGAGGAAACAGAAGCACCTGGACGAGCTTTGGTCGCAGGTGGTTTGGCTGAGGAGTGAGAATCATCAGTTGATAGATAAGCTGAACCATGTGTCGGAGAGCCATGATCGTGTGGTTCAGGAGAATGCTCAGCTCAAAGAGGAAGCTTTGGAGCTTCGTCAGATGTTAAAGGACATGAGTCTTAACAGTCCCTGTCCTTCTTTGGGTCCTCTGGAGGATGTCCTCTGTAACTCCTCCTACCTCGGACCTGATTCCTCCAACAACCCATCCTTAACCACCACATCCATCGACCTCCTCGGCTGA	609	0.4729	MQAREVSGLNYQFQVHSSPCPYPSPHYSSIQNNISTFQLQRFANQLYNFQNPPQVQDFSPQSSCLSSNSTSDEADEQQQNLIINERKHRRMISNRESARRSRMRKQKHLDELWSQVVWLRSENHQLIDKLNHVSESHDRVVQENAQLKEEALELRQMLKDMSLNSPCPSLGPLEDVLCNSSYLGPDSSNNPSLTTTSIDLLG	202

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju03g1582	202	FunFam	BZIP transcription factor	84	135	-	-
	Alju03g1582	202	Pfam	bZIP transcription factor	86	136	IPR004827	GO:0003700\|GO:0006355
	Alju03g1582	202	PANTHER	BASIC LEUCINE ZIPPER 43-RELATED	18	168	IPR044521	-
	Alju03g1582	202	SMART	brlzneu	82	146	IPR004827	GO:0003700\|GO:0006355
	Alju03g1582	202	CDD	bZIP_plant_GBF1	87	138	IPR045314	GO:0003700\|GO:0006355
	Alju03g1582	202	MobiDBLite	consensus disorder prediction	51	80	-	-
	Alju03g1582	202	SUPERFAMILY	Leucine zipper domain	86	136	IPR046347	GO:0003700\|GO:0006355
	Alju03g1582	202	MobiDBLite	consensus disorder prediction	51	78	-	-
	Alju03g1582	202	Coils	Coil	130	164	-	-
	Alju03g1582	202	MobiDBLite	consensus disorder prediction	182	202	-	-
	Alju03g1582	202	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	84	147	IPR004827	GO:0003700\|GO:0006355
	Alju03g1582	202	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	89	104	IPR004827	GO:0003700\|GO:0006355
	Alju03g1582	202	Gene3D	-	84	139	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju03g1582	Alju-ChrAlju03	44313940	44314548	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju03g1582	46	166	bZIP Transcription Factor Family	AT3G30530	72.358	1.43e-53	167

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Alju03g1582		bZIP_1	3.2e-13	CL0018