Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1576 ATGCTCAAAGAAGGTAACGGCAATGGCGTCGCCAGTAATATCAGCTGGGCGCGTATCTGTGACACGTGCCGCTCTGCTCCCTGCACTGTGTACTGCCGCGCTGACATGGCTTACCTCTGCTCTGGCTGCGACGCCCGCATCCACGCCGCCAACCGCGTCGCATCCCGCCACGAGCGCGTCTGGGTTTGTGAGGCCTGTGAGCGCGCCCCCGCCGCGTTTCTCTGCAAGGCCGACGCCGCCTCCCTCTGCTCTGCCTGCGACGCCGAAATCCACTCCGCCAACCCCCTCGCCAGCCGTCACCACCGCGTCCCCATTCTCCCCATCTACGGTTCTCCTTCCACCGCGGGCTCTGCTCCTGACGGGGATGATGATTTTCTAGCTCACGGTGACGATGATGCGGAGGAGGAGGAGGTTGTCGACGAAGACGATGAAGACGAGGCCGCCTCGTGGTTGTTGCTGAATCCTGTGAAGAACAGCAACCACATCAACAACAATTCCAACAACAACAATCAAAGCAACGGTTTTTTGTTTGGTTCTGGGGAGGTTGATGATTATTTGGACCTCATGGATTGCAATTCATGTGCTGAAAATCCGTTGACCGATCATTACAATCAGCAGCAACATTATGATGTTCCTCAGAAGAACTATGCCGGCGACAGTGTCGTTCCGGTTCAGCTGCAGCAGCACCATTTTCAGTTGGGTTTGGAGTTTGATTCGTCAAAATCTGGCTACAGTGCTTTCAACGGTTCTGTTACTCAAAATGTTTCCATTTCGTCAGTAGATGTTGGGATTGTGCCGGAATCAACTATCAGCGATGGCTCGATTTCCCATTCAAGACCTCCAAAAGGGACAATTGACCTATTTTCTGGGCCTCCAATTCAGATACCTTCGCAGCTTAGTCCGATGGACAGGGAGGCCAGGGTTTTGAGATACAGAGAGAAGAAGAAGACAAGAAAGTTTGAGAAGACAATAAGGTATGCCTCTAGGAAGGCATATGCAGAGACAAGACCTCGTATCAAAGGTCGATTCGCAAAGAGAACAGAGGTGGAAGCTGAAGTGGACCAGATGTTCTCTACTTCTCTAATGACCAAAACTGGATATGGCATTGTTCCTTCTTTCTGA 1122 0.5205 MLKEGNGNGVASNISWARICDTCRSAPCTVYCRADMAYLCSGCDARIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSACDAEIHSANPLASRHHRVPILPIYGSPSTAGSAPDGDDDFLAHGDDDAEEEEVVDEDDEDEAASWLLLNPVKNSNHINNNSNNNNQSNGFLFGSGEVDDYLDLMDCNSCAENPLTDHYNQQQHYDVPQKNYAGDSVVPVQLQQHHFQLGLEFDSSKSGYSAFNGSVTQNVSISSVDVGIVPESTISDGSISHSRPPKGTIDLFSGPPIQIPSQLSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTEVEAEVDQMFSTSLMTKTGYGIVPSF 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1576 373 SMART bboxneu5 15 62 IPR000315 GO:0008270
Alju03g1576 373 SMART bboxneu5 63 105 IPR000315 GO:0008270
Alju03g1576 373 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
Alju03g1576 373 Pfam CCT motif 304 346 IPR010402 GO:0005515
Alju03g1576 373 CDD Bbox1_BBX-like 19 62 - -
Alju03g1576 373 ProSiteProfiles CCT domain profile. 304 346 IPR010402 GO:0005515
Alju03g1576 373 MobiDBLite consensus disorder prediction 111 140 - -
Alju03g1576 373 Pfam B-box zinc finger 60 105 IPR000315 GO:0008270
Alju03g1576 373 MobiDBLite consensus disorder prediction 125 140 - -
Alju03g1576 373 CDD Bbox1_BBX-like 62 105 - -
Alju03g1576 373 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Alju03g1576 373 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 20 361 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1576 Alju-ChrAlju03 44276636 44278361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1576 1 373 C2C2-CO-like Transcription Factor Family AT3G02380 57.106 2.87e-139 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Alju03g1576 zf-B_box 1.3e-07 No_clan