Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1526 ATGGGTCGCCGGAAGATCAAGATGGAGATTGTGAAGGACGCAGCGTCGAGGTTGGTGACCTTCTCAAAGCGCCGGAACGGACTGTTCAAGAAGGCGAACGAGCTCGCAATCCTGTGCGGCGCAGAACTCGCCATTGTGGTGTTCTCGCCAGGTGGCAAACCCTTCTCCTTCGGCCATCCCTCCGTCGATGCGGTCACTGAGAGGTTTCTCCGGCACCTCCAAGACGAAGACGACGGCGACGAGGAAGAGGAGGCAAAATCGCCGGCAGGTGGGACATCTTCTTCTTCTGGTTCGAAGAAAGCTCGTCGGAAGGCGGAGAAATTGAACAAGCGGTTAATGAATCTGACAAAGGAGCTGGAGGAAGAGAAGAAAAAGGGGGCAATTCTGGACCAAGCGATCGAGGAGAAGAAGCAGGAGTATGGCCTTGAGCCTGGGCTTGAGATTGGGCCTGGTGATCTGAGGAAGCTTGAGGGATTGAAGCGATCGCTGGAGAAAGTGAGGGAAGAGGTGAAGCTGAGGAAGAGAGAAATGGAGGCAGCGTCGTCTTTGCTGGTACTTGCAGAGAAATTACAGTTGAAGGAAGACAATAACAATAATTAG 600 0.5333 MGRRKIKMEIVKDAASRLVTFSKRRNGLFKKANELAILCGAELAIVVFSPGGKPFSFGHPSVDAVTERFLRHLQDEDDGDEEEEAKSPAGGTSSSSGSKKARRKAEKLNKRLMNLTKELEEEKKKGAILDQAIEEKKQEYGLEPGLEIGPGDLRKLEGLKRSLEKVREEVKLRKREMEAASSLLVLAEKLQLKEDNNNN 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1526 199 Coils Coil 153 183 - -
Alju03g1526 199 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Alju03g1526 199 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju03g1526 199 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Alju03g1526 199 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju03g1526 199 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju03g1526 199 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju03g1526 199 PANTHER MADS BOX PROTEIN 3 171 - -
Alju03g1526 199 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju03g1526 199 MobiDBLite consensus disorder prediction 75 109 - -
Alju03g1526 199 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Alju03g1526 199 Coils Coil 98 139 - -
Alju03g1526 199 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1526 Alju-ChrAlju03 43742859 43743458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1526 1 189 Type I MADS-box Gene Family AT2G34440 44.974 2.70e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju03g1526 SRF-TF 4.7e-23 No_clan