Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1500 ATGCTCTTCCTCTCACGAAAGATTCCCCATTGGGGTTTGCTGATTGGTTATTCTCATTTCCAGGAGGTCGATGCAATGAAGCAGTCTTTTGACATTTCGGCTTCTGGTCCAACCAAGATTTCATCTATAAATATTCCTAAAGAAGTGGGGCACAATGCTTGGGAGGTTTTATCTGGATCTGATACTTACCATGCCTCATCGGATGCTAGCCTTTTTTCTAGCTCGTTACCTGTTTTGTCACATGAAAAGTTGAACTTGAACGACGCTGAAAATGAGTATCAGTCTGTGGATGACATCTCATCTGGCTTTAAAAAGCATCACCAAGATTTAGAGGTTAATGAATCACTTGAAGATGCAAATATTCATGCACTTGGAACAACACTTCCAGATGACGAGGAGGAGCTTTTAGCTGGCATAACAGATGATTTTGACCTGAGTGGTTTGCCTGGTTCCCTGGAGGATTTGGAAGATTATGATCTTTTTGGTAGCGGTGGAGGAATGGAACTGGAAAATGATGCCCAGGAAAGTCTCACAGTGGGCATTTCAAAATTAGGTTTCTCTGATAGCACAATTGGTAACGGTTTGCCCCATTATTCTTTTACTAATGGTGTTGGAACAGTTGCTGGGGAACATCCCTATGGGGAGCATCCTTCTCGAACATTATTTGTTCGAAATATTAACAGTAATGTGGAGGATTCAGAATTGAGAGCCCTTTTTGAGCAATACGGTGATATTAGAACCCTCTATACTGCATGTAAACATCGGGGGTTTGTAATGATATCCTACTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCATTGCAAAACAAACCACTGCGGCGGAGGAAACTTGACATTCATTTCTCAATACCAAAGGATAATCCATCAGACAAGGATATGAATCAAGGAACTTTGGTGGTTTTTAATTTGGATCCATCTGTTTCAAATGAAGACCTTCGACAAATATTTGGGGCTTATGGCGAGGTCAAAGAGATAAGGGAAACTCCACACAAGAGGCATCATAAATTTGTTGAATTTTATGATGTCAGAGCTGCAGAAGCAGCACTCAAATCATTGAACAGGAGTGACATTGCGGGTAAACGTATAAAGCTGGAACCTAGCCGTCCTGGCGGAGCTCGTCGAAATTTGATGCTCCAACTAAATCAAGATCTTGATCAAGATGAATCTCGGAATTTCCGACATCAGGTGGGTTCACCTGTGGCCAACTCTCCACCAGGTAACTGGTTGCAGTTTAGCAGCCCCATTGAACACAAGTCAATACAATCGATCAGCAATTCTCCTGGTTCAAGGATTATGAGCCCAACAACTGGCAACCATTTACCAGGATTAGCTTCAATCTTGCAACCTCAAGGATCTAACTCTCTAAAAGGTGCAGCTATTAGTAAGGACCTAGGAAGGAATAGTCATGGAGATCACATGTTTAGTAGTAGCAATTCATCACATGGAGCTGCAGTTCAATCTCACTCACTTCCAGAACCAACATTCGGCCAATATCATGGAGCTTTGTCCTCTTTTGGTCCATCAACTTCGAATGGATCTTCTGTGGAAACCTTGTCTGGGCCTCAGTTTCTTTGGGGAAATTCAAGCTTATACTCTGAGCACACCAAACCTTCACCTTGGCCTAGAACATCCGTAGGGCCTCCATTCACATCGAATGGAAAGGGTCATGGCTTCCCATACTCTGGTCAGAATGGTTCCTTTGTTGGGTCTTCCCAGCATCATCTTCATCATCATGTAGGCTCTGCTCCATCAGGTGTTCCATTTGAGAGGCGTTTTGGTTTTTTTCCTGAATCACCCGAAACCTCATTTATGAATCATGTTGGTTATGGAGGCATAAATGTGGGACACAATGATGGAAACTACATGGTTAACATGGGTGGATCTGTCAATGCTGGCATTACAATACCGAGGAATGTGTCTGAAAATGTTCAATCAAACTTTAGAATGAGAACTTCTCCAAGGCTTAGCCCTGTGTTTCTGGGCAATGGTCCTTACCCTGGCCTGCCACCCACTGCCCTGGATGGTTTGACTGACCGTGGAAAGAGTAGACGGCTTGAGAACAATGGTAACCAAGTTGATAGCAAGAAGCAATTTTTGCTTGACTTGGATAAGATTAAAAGCGGTGAAGATGTCAAGACTACTTTAATGATAAAGAATATCCCAAATAAGTACACTTCAAAAATGTTACTAGCTGCCATTGACGAAAATCACAGGGGCACCTATGATTTCCTCTATCTTCCTATTGATTTTAAGAATAAGTGTAATGTGGGTTATGCATTTATCAACATGCTGTCACCCTCTCTTATCATTCCATTCTACGAGACATTCAATGGAAAGAAGTGGGAGAAGTTTAATAGTGAGAAAGTTGCTTCTTTGGCATATGCTCGAATCCAAGGAAAGGCTGCCCTTGTGAGCCACTTCCAGAATTCAAGCTTGATGAATGAAGACAAGCGATGTCGCCCTATTCTTTTCCACTCAGAGGGTCCTGAAGCCGGTGATCAGATCGTACAAGAACATCTTCCCTCCAACAATCTCAACATCCAGGTTCTCAAGTCAAGTGATTCTCATTTGAATGACTCTCTTGGAAGCCCCCCAAAGGATAACCCTCCTGTGAACTAG 2643 0.4283 MLFLSRKIPHWGLLIGYSHFQEVDAMKQSFDISASGPTKISSINIPKEVGHNAWEVLSGSDTYHASSDASLFSSSLPVLSHEKLNLNDAENEYQSVDDISSGFKKHHQDLEVNESLEDANIHALGTTLPDDEEELLAGITDDFDLSGLPGSLEDLEDYDLFGSGGGMELENDAQESLTVGISKLGFSDSTIGNGLPHYSFTNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDMNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFVEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQDLDQDESRNFRHQVGSPVANSPPGNWLQFSSPIEHKSIQSISNSPGSRIMSPTTGNHLPGLASILQPQGSNSLKGAAISKDLGRNSHGDHMFSSSNSSHGAAVQSHSLPEPTFGQYHGALSSFGPSTSNGSSVETLSGPQFLWGNSSLYSEHTKPSPWPRTSVGPPFTSNGKGHGFPYSGQNGSFVGSSQHHLHHHVGSAPSGVPFERRFGFFPESPETSFMNHVGYGGINVGHNDGNYMVNMGGSVNAGITIPRNVSENVQSNFRMRTSPRLSPVFLGNGPYPGLPPTALDGLTDRGKSRRLENNGNQVDSKKQFLLDLDKIKSGEDVKTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKAALVSHFQNSSLMNEDKRCRPILFHSEGPEAGDQIVQEHLPSNNLNIQVLKSSDSHLNDSLGSPPKDNPPVN 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1500 880 PANTHER RNA RECOGNITION MOTIF-CONTAINING 67 852 - -
Alju03g1500 880 CDD RRM3_MEI2_like 723 808 IPR034454 -
Alju03g1500 880 MobiDBLite consensus disorder prediction 478 501 - -
Alju03g1500 880 CDD RRM1_MEI2_like 218 294 IPR034453 -
Alju03g1500 880 MobiDBLite consensus disorder prediction 543 579 - -
Alju03g1500 880 MobiDBLite consensus disorder prediction 472 525 - -
Alju03g1500 880 SUPERFAMILY RNA-binding domain, RBD 722 807 IPR035979 GO:0003676
Alju03g1500 880 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 292 IPR000504 GO:0003723
Alju03g1500 880 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 377 IPR000504 GO:0003723
Alju03g1500 880 FunFam Protein MEI2-like 1 303 398 - -
Alju03g1500 880 SUPERFAMILY RNA-binding domain, RBD 216 379 IPR035979 GO:0003676
Alju03g1500 880 Gene3D - 304 400 IPR012677 -
Alju03g1500 880 MobiDBLite consensus disorder prediction 543 591 - -
Alju03g1500 880 Gene3D - 208 303 IPR012677 -
Alju03g1500 880 SMART rrm1_1 722 798 IPR000504 GO:0003723
Alju03g1500 880 SMART rrm1_1 220 288 IPR000504 GO:0003723
Alju03g1500 880 SMART rrm1_1 305 373 IPR000504 GO:0003723
Alju03g1500 880 CDD RRM2_MEI2_like 303 373 - -
Alju03g1500 880 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 371 IPR000504 GO:0003723
Alju03g1500 880 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 285 IPR000504 GO:0003723
Alju03g1500 880 Pfam RNA recognition motif 2 720 816 IPR007201 -
Alju03g1500 880 MobiDBLite consensus disorder prediction 509 525 - -
Alju03g1500 880 FunFam MEI2-like protein 5 isoform 2 208 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1500 Alju-ChrAlju03 43495300 43502267 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1500 214 382 Eukaryotic Initiation Factors Gene Family AT1G71770 25.907 4.22e-06 48.5