Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1499 ATGAGCTTCTCAACATCAGGTACGAGCGACATGAAGACCATCACCAACACCACCAACAGAGACAAAACGATTGCTCAGTACCGTGCTGATGCTGAGATTTTCGCCGAGTTTGGGCGTTCTAGCGTGACTGGCAAATCATTCGACTACTCGAGGATAATCTGTTATAGTGAGAATTGCTTTGAATTGTTGGGTTTAGATAGACGTTTTGATTCAAAACAACCGATAAGTCTGATTGGAGTTGATGTCAGAACCCTGTTCACGTCTTCTTCTGGGGCTTCATTTGCAAAAGCTGCGGCGTCAGAGGAAATATCACTTTTGAACCCGATTTGGCTCTATTCAAGAACAACTCAGAAATCGTTCTATGCAATATTGCACAGGATTGACGTAGGGATTTCACAAAAACTTGCAGTTCGAGCAATTTCAAGGCTGCAATCTCTTCCTGGGGGAGATATTGGTGTGTTGTATGATACGGTTGTTGAAGAAGTCCAGAAGCTTACTGGATATGACAGGGTTATGGTTTATAAGTTCCATGAGGATGATCACGGTGAACTTGTATCAGAAATTAGAAGGTCAGACTTAGAGCCCTATCTGGGTTTACATTATCCTGCCGCGGATATTCCTCAAGCTGCTCGCTTCTTATTTAAGCAAAATCGTGTCAGGATGATATGTGATTGCCGTGCAAATTCAGTTAAGGTCATACAGAGTCAACAATTAAAGCAACCACTTTGCCTGGTCAATTCAACCCTTCGGTCACCACATGAATGCCACGCACAGTACATGGCTAATATGGGTTCTGTTGCTTCTCTGGTGCTAGCAGTAATTGTCAATGGAAATGATACAACGAAGCTTTGGGGTTTATTAGTTTGCCATCACACTTCACCACGTCACGTGCCTTTCCCTCTTCGCTATGCTTGTGAATTCCTCATGCAGGCTTTTGGACTGCAGCTTCACATGGAGATGCTAAGAGTAGCACAAATGGCAGAGAAGAGAATGCTTAGAACACAGACCTTATTAAGTGATATGCTTCTCCGAGATGTCCCATTGGGTATTGTCACTCAGTCTCCCAGTATCATGGATCTTGTGAAGTGTGATGGGGCAGCATGTGGAGATTGTTGGCTATTAGGCACCACCCCAACTGAGTCACAGGTAAAAGACGTTGCAGAATGGGTACTCAGTAACCATGGCGACTCAACAGGTTTGAGCACTGATAGTTTGGCCGAAGCTGGTTATCCTAGAGCTGCTTTACTGGGGAATGCAGTTTGTGGCATGGCAACAGCAAGAATAAATATGAGAGATCTTTTGTTCTGGTTCAGATCTCACGCTGCCAAGGAAGTTCAGTGGGGAGGAGCCAAGTACCATCCAGAGGATAAAGATGATAGAGGAAGATTGAATCCAAGATCATCATTTAAAGCTTTCCTTGAAGTAACCAAAAGCAAAAGCCTGCCTTGGGAAATGTCAGAAATCAATATTATTCACTCATTGCAGCTTATAGTGCGAGAATCTTTCCAAAAGACACAGAACTTTGGTCCTAAGACACTTGGTTATGCTCAGCATAGTGATACTGCAATGGCTGGGATGGATGAACTCAGTTCGGTGGCATTTGAGATGGTTAGGTTAATTGAGACAGCAACAGTTCCAATTTTGGGAGTTAATTCAGCTGGTCTAATCAACGGATGGAATGCAAAAATTGCAGAATTGACTGGGCTGCAGGCTAGTGAAGCTATGGGGAAATCCCTAGTAAATGAAATAGTCCATGCTGATTCACGTGAAACTGCTGAAAATATTTTAAGCAGAGCCTTGCAAGGTCAGGAGGACAAAAACGTTGAGTTGAAGCTAAAGTATTTTGGGCTTCATCGACAAAAGTCAATTATATATATAATAGCTAATGCCTGCACTAGTAGGGATCACAAAAATGCAGTTGTTGGGGTATGCATTGTGGGTCAAGATATCACTTATGAAAAAGTTTTCGGAAACAAATTTATCAAGTTGGAAGGTGATTACAAGGCTATCATCCAGAGTCTCAATCCATTGATTCCACCTATATTTGCTTCTGATGAGAATGCCCGCTGTTCTGAATGGAATGCAGCCATGGAAACGTCGACAGGTTGGAAGAGGGATGAAGTTATAGGAAAACTGCTTCCCGGAGAAATCTTTGGGGGTCTATGTCAACTGAAAGGTCGAGATACATTGACCAACTTTATGATTTCATTGTATAGAGGAATCAGTGGTCAAGATTCTGAGAAATTCTCTTTCGGATTTTTCAATAGAAAAGAAGAATTTGTGGAGGTTTTCTTAACAGCAAACAAGAGGAATGATGCATAAATGAAGAATCCTTTGAATGGTATGTGCTTCACAAACCAACTCTTGGAGAATACGGCTGTCTCAGAAAATCAAAAACAGTTTCTTGATGCTAGCAATGCATGTGAGAGACAGATCATGTCCATTATTGAGAACACAGATTTGGGAAGCATTGACGAGGGCATCATGAAGCTAAACGATGAAGAATTTCTTCTGGGGAATATACTAGATGCTATTGTAAGTCAAGTCATGATCTCGATAAGAGGGAAAAACTTGCAGCTGTTTCATGAAATTCCTAATGATGTCAAGACACTTACCCTATATGGTGATCAAATTAGGCTTCAGGTGGTCTTGTCCGACATTTTGCTTAATGTGGTGAGCCACACACCTTCTCCTAATGGCTGGATAGAAATTAAGATTTCACCCGGTTTGAAGATAATGCAAGATGGCAACGAGTTTATCCATCTCCAGTTCAGAATGACACATGCGGGTCATGGCCTTCCTTCTGCGGTTCTTCAGGATATGTTTGAAGCAGAGGATCAATGGACTACAGAGGAAGGTTTAGGGCTATCTGTGTCCCGGAAAATCCTCAGTAGGATGAATGGTCATGTTCACTATGTAAGAGAACATAACAAGTGCTACTTCCTCATTGATCTTAAACTGAGAACAAGAAAATAA 2976 0.42 MSFSTSGTSDMKTITNTTNRDKTIAQYRADAEIFAEFGRSSVTGKSFDYSRIICYSENCFELLGLDRRFDSKQPISLIGVDVRTLFTSSSGASFAKAAASEEISLLNPIWLYSRTTQKSFYAILHRIDVGISQKLAVRAISRLQSLPGGDIGVLYDTVVEEVQKLTGYDRVMVYKFHEDDHGELVSEIRRSDLEPYLGLHYPAADIPQAARFLFKQNRVRMICDCRANSVKVIQSQQLKQPLCLVNSTLRSPHECHAQYMANMGSVASLVLAVIVNGNDTTKLWGLLVCHHTSPRHVPFPLRYACEFLMQAFGLQLHMEMLRVAQMAEKRMLRTQTLLSDMLLRDVPLGIVTQSPSIMDLVKCDGAACGDCWLLGTTPTESQVKDVAEWVLSNHGDSTGLSTDSLAEAGYPRAALLGNAVCGMATARINMRDLLFWFRSHAAKEVQWGGAKYHPEDKDDRGRLNPRSSFKAFLEVTKSKSLPWEMSEINIIHSLQLIVRESFQKTQNFGPKTLGYAQHSDTAMAGMDELSSVAFEMVRLIETATVPILGVNSAGLINGWNAKIAELTGLQASEAMGKSLVNEIVHADSRETAENILSRALQGQEDKNVELKLKYFGLHRQKSIIYIIANACTSRDHKNAVVGVCIVGQDITYEKVFGNKFIKLEGDYKAIIQSLNPLIPPIFASDENARCSEWNAAMETSTGWKRDEVIGKLLPGEIFGGLCQLKGRDTLTNFMISLYRGISGQDSEKFSFGFFNRKEEFVEVFLTANKRNDAXMKNPLNGMCFTNQLLENTAVSENQKQFLDASNACERQIMSIIENTDLGSIDEGIMKLNDEEFLLGNILDAIVSQVMISIRGKNLQLFHEIPNDVKTLTLYGDQIRLQVVLSDILLNVVSHTPSPNGWIEIKISPGLKIMQDGNEFIHLQFRMTHAGHGLPSAVLQDMFEAEDQWTTEEGLGLSVSRKILSRMNGHVHYVREHNKCYFLIDLKLRTRK 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1499 991 Gene3D - 805 981 IPR036890 -
Alju03g1499 991 ProSitePatterns Phytochrome chromophore attachment site signature. 250 259 IPR013516 -
Alju03g1499 991 Gene3D PAS domain 679 775 - -
Alju03g1499 991 ProSiteProfiles PAS repeat profile. 666 711 IPR000014 -
Alju03g1499 991 SUPERFAMILY PYP-like sensor domain (PAS domain) 538 646 IPR035965 -
Alju03g1499 991 Pfam Phytochrome region 334 505 IPR013515 GO:0006355|GO:0009584
Alju03g1499 991 NCBIfam PAS domain S-box protein 539 654 IPR000014 -
Alju03g1499 991 FunFam Phytochrome 528 660 - -
Alju03g1499 991 SMART HKATPase_4 875 989 IPR003594 -
Alju03g1499 991 Pfam PAS fold 666 770 IPR013767 GO:0006355
Alju03g1499 991 Pfam PAS fold 535 650 IPR013767 GO:0006355
Alju03g1499 991 SUPERFAMILY GAF domain-like 134 317 - -
Alju03g1499 991 PRINTS Phytochrome signature 648 668 IPR001294 GO:0006355|GO:0009584
Alju03g1499 991 PRINTS Phytochrome signature 535 551 IPR001294 GO:0006355|GO:0009584
Alju03g1499 991 PRINTS Phytochrome signature 86 108 IPR001294 GO:0006355|GO:0009584
Alju03g1499 991 PRINTS Phytochrome signature 432 451 IPR001294 GO:0006355|GO:0009584
Alju03g1499 991 PRINTS Phytochrome signature 465 483 IPR001294 GO:0006355|GO:0009584
Alju03g1499 991 PRINTS Phytochrome signature 350 370 IPR001294 GO:0006355|GO:0009584
Alju03g1499 991 PRINTS Phytochrome signature 628 645 IPR001294 GO:0006355|GO:0009584
Alju03g1499 991 PRINTS Phytochrome signature 554 569 IPR001294 GO:0006355|GO:0009584
Alju03g1499 991 Gene3D PAS domain 534 654 - -
Alju03g1499 991 Gene3D PAS domain 51 253 - -
Alju03g1499 991 SUPERFAMILY GAF domain-like 328 505 - -
Alju03g1499 991 ProSiteProfiles PAS repeat profile. 532 603 IPR000014 -
Alju03g1499 991 SMART pas_2 534 601 IPR000014 -
Alju03g1499 991 SMART pas_2 665 735 IPR000014 -
Alju03g1499 991 FunFam Phytochrome 325 452 - -
Alju03g1499 991 Gene3D - 134 478 IPR029016 -
Alju03g1499 991 Gene3D - 325 495 IPR043150 -
Alju03g1499 991 SUPERFAMILY PYP-like sensor domain (PAS domain) 50 130 IPR035965 -
Alju03g1499 991 CDD PAS 543 650 IPR000014 -
Alju03g1499 991 ProSiteProfiles Histidine kinase domain profile. 770 989 IPR005467 -
Alju03g1499 991 SMART gaf_1 150 330 IPR003018 GO:0005515
Alju03g1499 991 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 150 310 IPR016132 -
Alju03g1499 991 Pfam PAS fold 50 131 IPR013654 GO:0006355
Alju03g1499 991 SUPERFAMILY PYP-like sensor domain (PAS domain) 680 720 IPR035965 -
Alju03g1499 991 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 875 987 IPR003594 -
Alju03g1499 991 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 838 985 IPR036890 -
Alju03g1499 991 Pfam GAF domain 150 319 IPR003018 GO:0005515
Alju03g1499 991 PANTHER OS08G0260000 PROTEIN 77 824 - -
Alju03g1499 991 CDD HATPase_Phy-like 874 987 IPR044767 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1499 Alju-ChrAlju03 43488530 43493402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1499 4 989 Histidine Kinase Gene Family AT4G18130 56.018 0.0 1233