Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1460 ATGGATTTTGAAAACCAATCCATGTCAGTTTCTTCACCTCAGAGGAAGACAGGAAGGGGAAAGATTGAAATCAAGAGGATTGAGAACACCACAAACCGCCAAGTCACCTTCTGCAAACGCAGAAATGGACTGCTCAAGAAGGCTTATGAACTATCTGTTCTCTGTGATGCTGAAGTAGCTTTAATCGTCTTCTCAAGCCGTGGTCGCCTCTATGAGTATGCTAATAACAGTGTCAAAGCAACTATTGATAGGTACAAGAAAGCATGTTCAGATTCTACTGGTGGATCTACTTCTGAAGTTAATGCTCAGTTCTATCAACAAGAATCTGCCAAACTGCGTGCTCAGATTAGTAACCTGCAGAATCACAACAGGCAAATGATGGGAGAGGGTTTGGGCAATCTGCACTCGAAGGATCTCAAAAACCTGGAGGGTAGGTTAGAAAGAGGGATCAGCAGAATTCGTTCCAAAAAGAATGAGCTTCTATCCGCAGAAATTGAATACATGCAGAAGAGGGAAATAGAGTTGCATAACAACAATCAACTTCTTCGAGCAAGGATAGCTGAAAGTGAGAGGAACCAGCAGCAAAACATGAATGTAGTGGGAGGAGGAGGGTCGGAGTATGAATCCATGCAATCTCAGCAGCAGCAGCAATTTGAGAATAGAGGTTACTTTCAGGTCACTGCATTACAACCCAATCATCACTATGCACGCCAAGACCACATGGCCCTCCAATTAGTGTATGTTTGCTTCATCACTTTCTATATATTCCCTTCTTTATTTCTATTCTTTCTAACCATAGCCTACTTAAGTAGAACCCAATTAAGCTGGAATGATTTGTTTTCAGTAGTTGATGCGCCATGCAAGACTGAGTTTCTTCTTCTGCAATTGTACTTTGGAGTCGCGCGCTAA 909 0.4235 MDFENQSMSVSSPQRKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKACSDSTGGSTSEVNAQFYQQESAKLRAQISNLQNHNRQMMGEGLGNLHSKDLKNLEGRLERGISRIRSKKNELLSAEIEYMQKREIELHNNNQLLRARIAESERNQQQNMNVVGGGGSEYESMQSQQQQQFENRGYFQVTALQPNHHYARQDHMALQLVYVCFITFYIFPSLFLFFLTIAYLSRTQLSWNDLFSVVDAPCKTEFLLLQLYFGVAR 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1460 302 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Alju03g1460 302 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Alju03g1460 302 CDD MADS_MEF2_like 18 92 IPR033896 GO:0000977|GO:0045944
Alju03g1460 302 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 205 - -
Alju03g1460 302 Coils Coil 139 159 - -
Alju03g1460 302 Coils Coil 102 129 - -
Alju03g1460 302 SUPERFAMILY SRF-like 18 94 IPR036879 GO:0003677|GO:0046983
Alju03g1460 302 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Alju03g1460 302 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Alju03g1460 302 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Alju03g1460 302 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Alju03g1460 302 MobiDBLite consensus disorder prediction 1 16 - -
Alju03g1460 302 Gene3D - 29 95 IPR036879 GO:0003677|GO:0046983
Alju03g1460 302 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju03g1460 302 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Alju03g1460 302 MobiDBLite consensus disorder prediction 1 23 - -
Alju03g1460 302 Pfam K-box region 99 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju03g1460 302 FunFam agamous-like MADS-box protein AGL11 29 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1460 Alju-ChrAlju03 42969538 42977600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1460 15 246 MADS-box Gene Family AT3G58780 66.809 5.74e-105 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju03g1460 K-box 3.7e-26 No_clan