LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju03g1445	ATGGTAGCGCAATGCTTCATGAACAAGACTCCAGAGCGTTCAAGGGGTCAAAAGGCGCTAGAACTTTTGTTCTCTTCTGATTTTTTTATTATTTCCAAGCTAAACCGGAGAGGAAAAATTCCGAACGCACTTCATCGAGAGAAGGATCCCAAAATCCCGAAGCAAAACGCACGTAGAGGTGGCACAAGCGCTGACGACTTTCTGTTGGGTTACGCTTTCGGCGGAAATGTGAAAAAGACTTGCTTCCAGGCCTTGTCTTGGACAGATTTGACAAAGTTACTAATGTGTGCCACTGGATTTCTGGGATGGTCCTCCTGGGAGCCTGAGGTGGGAGTTTGGTTACTAGCGATGGATGAAGCTCAGGGCAGTTCTGGCGCCCTGCCTCCTTTCCTGACAAAGACTTATGAGATGGTGGACGATCCTTCCACAGATTCGATTGTTTCCTGGAGTGCCTCTAACACAAGTTTCATAGTATGGAATCCTCCAGAATTTGCAAGTGAGTTGCTACCAAGATTCTTTAAGCACAATAACTTCTCTAGTTTCGTCAGACAGCTGAACACATATGGTTTTAGAAAAGTTGATCCAGAACAATGGGAATTTGCAAATGATGATTTCATAAGAGGTCAACCGCATCTTTTGAAGAATATACATAGACGAAAGCCAGTTCATAGTCATTCTTTACATAATCTCCAAGGACAAGGAACTTCTCCATTAGCAGAACCAGAAAGACAGAGATTAAAAGGCAAAATAGAGAGTCTGAAACATGAAAACGAGCGACTTCGTCTAGAGTTAGAGAGACATGATCAGGAGTGGAAAGTAAATGAAATTAAAATAGGATGCTCAAAGGAGAGATTGGGAAAGTTGGAAAGGAAACAACAAAAGATGGTCTCTTCTGTTTCTCAAGTGTTGCAGAAACCTGGAATTGCCTCGAACCTCTTGCAATTGTCAGAAACCCTGTATAGAAAACGAAGGTTGCCAAGAGGTGGTTGCTTTTGTGATGAAGCTGTAATTGAAGATGCTACAGAATCTTCCTCAGTGATACCTAGAGATAATGAAGATATAACTTCTATTTTGTCATCAAATGTGGAGAGACTGGAACAGCTGGAATCATTGCTGTTATTTTGGGAGAACATTGCTTTTGATTTTGGTGATTCCTTTGTTCATAGCCATTCTAATATGGATCTTGATGAATCTACAAGTTGTGTTGATAGTCCTGCTCTTTCTTGTATGCAACTTGATGACGAACTTCACCGTGTGTCATCTGGAATTGACATGAACTCTGAGCCTACTGGAGCTACTGTTTCTGATCCCGGTTCATCAAAAGAAAAACCTGTGGGAACCACCACTGTAGCAGCTGGTGTCAATGATGTATTCTGGGAACAGTTCTTGACAGAGAATCCTGGTTCTTCAGAAACTCATGAAGTACAGTCAGAGCAAAAGGATTCTGATAGCAGGAAGAATGAAGTAAAACCTAGTGACCGGAGTAAACTATGGTGGAGCATGAACAATGTAAATAGCCTTTCAGAACAGATGGGGCATCTTAGCCAAACAGAGAAAACTTAA	1563	0.4184	MVAQCFMNKTPERSRGQKALELLFSSDFFIISKLNRRGKIPNALHREKDPKIPKQNARRGGTSADDFLLGYAFGGNVKKTCFQALSWTDLTKLLMCATGFLGWSSWEPEVGVWLLAMDEAQGSSGALPPFLTKTYEMVDDPSTDSIVSWSASNTSFIVWNPPEFASELLPRFFKHNNFSSFVRQLNTYGFRKVDPEQWEFANDDFIRGQPHLLKNIHRRKPVHSHSLHNLQGQGTSPLAEPERQRLKGKIESLKHENERLRLELERHDQEWKVNEIKIGCSKERLGKLERKQQKMVSSVSQVLQKPGIASNLLQLSETLYRKRRLPRGGCFCDEAVIEDATESSSVIPRDNEDITSILSSNVERLEQLESLLLFWENIAFDFGDSFVHSHSNMDLDESTSCVDSPALSCMQLDDELHRVSSGIDMNSEPTGATVSDPGSSKEKPVGTTTVAAGVNDVFWEQFLTENPGSSETHEVQSEQKDSDSRKNEVKPSDRSKLWWSMNNVNSLSEQMGHLSQTEKT	520

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju03g1445	520	FunFam	Heat shock transcription factor 1	123	220	-	-
	Alju03g1445	520	Pfam	HSF-type DNA-binding	130	219	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Alju03g1445	520	PRINTS	Heat shock factor (HSF) domain signature	181	193	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Alju03g1445	520	PRINTS	Heat shock factor (HSF) domain signature	168	180	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Alju03g1445	520	PRINTS	Heat shock factor (HSF) domain signature	130	153	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Alju03g1445	520	MobiDBLite	consensus disorder prediction	420	446	-	-
	Alju03g1445	520	MobiDBLite	consensus disorder prediction	423	446	-	-
	Alju03g1445	520	Gene3D	-	123	220	IPR036388	-
	Alju03g1445	520	SMART	hsfneu3	126	219	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Alju03g1445	520	MobiDBLite	consensus disorder prediction	496	520	-	-
	Alju03g1445	520	Coils	Coil	243	270	-	-
	Alju03g1445	520	MobiDBLite	consensus disorder prediction	465	520	-	-
	Alju03g1445	520	MobiDBLite	consensus disorder prediction	223	242	-	-
	Alju03g1445	520	ProSitePatterns	HSF-type DNA-binding domain signature.	169	193	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Alju03g1445	520	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	121	367	IPR027725	-
	Alju03g1445	520	SUPERFAMILY	"Winged helix" DNA-binding domain	127	219	IPR036390	-
	Alju03g1445	520	MobiDBLite	consensus disorder prediction	474	493	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju03g1445	Alju-ChrAlju03	42821027	42824894	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju03g1445	117	520	HSF	AT4G18880	53.027	5.82e-122	362

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Alju03g1445		HSF_DNA-bind	1.8e-32	CL0123