Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1443 ATGGCTTCGGGGGCTATATTTTCGTCTCTGCGGCGGCGGAGGTCGCCGTCGTTGGAAGCCTTTCTTGCTCCGGTTGACCTCACAGATGTTTCCTTGGTTCATACTCTTTTGTCCGTCGCTAGCGAGCTCGTCTCTTGCTTCTCCGGGCGTTCGTTCTTCTTCCAACGCAAGAATTCGCGGGCGCTTATCCGAAATGTCGAGGTGTTTCTGTTGCTTCTGGAGTATCTACGGGATAACAGAACAAATATTCCGATGACCGGGTTGGTTTGCCTTAAGGAGCTCTATCTTCTTCTGTACCGGTCCAAGATTCTGCTTGATTATTGCGCGCAGTCGAGTAAGTTGTGGCTTTTGCTTCAGAACCATTCAGTTTCTGGTCATTTCCATGATTTGAATAAAGAAATTGCGACTCTCTTAGATGTATTCCCAATTAAGGATGTTCAATTGAGTGAGGATATTAGAGAACAGAGTGAGCTATTGCAGAAACAATCAAGGAGAGCTAAGTTATTTATTGACAAGAAAGACGATGAGCTCAGGATTGAGTTCTTGTCGTATCTCGATGAATTTGAGAATGGGCGAGTTCCTGACTCAGCTAGGCTACGATCATTTTTTATGAAGAAATTGCAGATTCTTGATGCTAGGAGTTGTAGAACAGAAATTGAGTCGTTGGAGGAGCAGATTATTAACCATGAAGGAGATGTTGAGCCAACAATTTCTGTGCTTAATGGTTTGGTTGCTTTGACACGGTATTCTAGATTTTTGCTCTTTGGATTTGAGGAAGATGAACTTGAATTAGAAAATGGAAGCCAGATGAAAAAACTGAAGAAGGGATTGATTACTCAAGAAATTGCTGAAACATTTGTAACTATTCCTAAGGACTTTTACTGCCCAATATCGTTGGATCTGATGAGTGATCCAGTGATAATCTCCACAGGACAAACATATGATAGAAGCTCCATATCAAGGTGGTTGGAAGAAGGGCATTGTACTTGTCCAAAAACAGGACAAATGCTTACCCACACAAAGCTTGTCCCGAATCGAGCTCTGAAGAATTTGATCATGAAGTTTAGCACTGCGCATGGAATCTCTCATGACTCGCTGGAGGCGGTAGGTGTAGCGCCAGATACCTTTCCAATGGCTTCTTTGTCGAAAGCCGCCCTCAAAGCCAACCGAGCAACGGCGCTGCTTCTCATTCAGCAGCTGGCGAATGGATCACAAGCTGCAGAGACTATAGCCGCCCGGGAGATACGATTGCTTGCGAAAACAGGCAAGGAAAACCGCGCATTCATCGGGGAAGCTGGGGCGATTCCTCGCCTTTGTAAACTACTTTCATCTCCTAATGCCGTTGCTCAGGAGAATTCAGTGACAGCGTTGCTCAACCTGTCGATATATGAGAACAACAAGAGCCGGATCATCAATGAAGAAGGTTGTCTGGAATCCATTGTTGATGTCTTGAGATTAGGTCACACAACAGAGGCAAGAGAGAATGCTGCTGCAACATTGTTCAGTCTCTCAGCAGTGCATGAATATAAGAAGAGAATTGCAGATAAGGCAGGAGCAATCCAGGCCCTGGCGCTGCTTTTGCAGGAGGGAAACTTGAGAGGAAAGAAAGATGCAGTAACAGCCTTATTCAATCTTTCCACCCACACCGATAACTGTATTAGAATGATCGAAGCCAGAGCAATAACAGCTCTAGTTGGCGCGTTGAGGACCGAAGGAGTGGCTGAGGAAGCAGCGGGCACTCTTGCCTTGATTGTCCGGCAACCGATAGGAGCCAAGGCGGTGGTGGAAGAGGAAGAAGCAGTAGCTGGATTGATGAAAATGATGCGATGTGGAACTGCCCGAGGGAAAGAGAATGCCGTGGCAGCATTGCTGGAGGTGTGCCGGAGTGGAGGTACAGCAGTAACCGAGAGGGTGGTGAGGGCACCGGCTTTGGCCGGATTGCTTCAAACCCTACTTTTTACAGGAACAAAAAGAGCCAGAAGGAAAGCAGCTTCACTTGCCAGAGTGTTTCAGAGATGTGAAAATGCATCTCTACATTATGGTGGTCTAGGTGTAGGATATGCATATGCTAGTAATTCAGCTACTGGTAGAGATACAACTTTTGCAGGGGATGTTTCAGTACCAATGTCTATTTCTGTGCCTGTCTTGTAA 2151 0.4603 MASGAIFSSLRRRRSPSLEAFLAPVDLTDVSLVHTLLSVASELVSCFSGRSFFFQRKNSRALIRNVEVFLLLLEYLRDNRTNIPMTGLVCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSVSGHFHDLNKEIATLLDVFPIKDVQLSEDIREQSELLQKQSRRAKLFIDKKDDELRIEFLSYLDEFENGRVPDSARLRSFFMKKLQILDARSCRTEIESLEEQIINHEGDVEPTISVLNGLVALTRYSRFLLFGFEEDELELENGSQMKKLKKGLITQEIAETFVTIPKDFYCPISLDLMSDPVIISTGQTYDRSSISRWLEEGHCTCPKTGQMLTHTKLVPNRALKNLIMKFSTAHGISHDSLEAVGVAPDTFPMASLSKAALKANRATALLLIQQLANGSQAAETIAAREIRLLAKTGKENRAFIGEAGAIPRLCKLLSSPNAVAQENSVTALLNLSIYENNKSRIINEEGCLESIVDVLRLGHTTEARENAAATLFSLSAVHEYKKRIADKAGAIQALALLLQEGNLRGKKDAVTALFNLSTHTDNCIRMIEARAITALVGALRTEGVAEEAAGTLALIVRQPIGAKAVVEEEEAVAGLMKMMRCGTARGKENAVAALLEVCRSGGTAVTERVVRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAYASNSATGRDTTFAGDVSVPMSISVPVL 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1443 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 364 IPR013083 -
Alju03g1443 716 SUPERFAMILY RING/U-box 277 362 - -
Alju03g1443 716 Gene3D - 512 668 IPR011989 -
Alju03g1443 716 ProSiteProfiles U-box domain profile. 288 362 IPR003613 GO:0004842|GO:0016567
Alju03g1443 716 PANTHER U BOX DOMAIN-CONTAINING 62 673 - -
Alju03g1443 716 Pfam Armadillo/beta-catenin-like repeat 423 461 IPR000225 GO:0005515
Alju03g1443 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 433 475 IPR000225 GO:0005515
Alju03g1443 716 Gene3D - 378 511 IPR011989 -
Alju03g1443 716 FunFam RING-type E3 ubiquitin transferase 489 674 - -
Alju03g1443 716 Pfam U-box domain 289 359 IPR003613 GO:0004842|GO:0016567
Alju03g1443 716 Coils Coil 212 232 - -
Alju03g1443 716 CDD RING-Ubox_PUB 290 342 IPR045210 -
Alju03g1443 716 FunFam RING-type E3 ubiquitin transferase 288 363 - -
Alju03g1443 716 SUPERFAMILY ARM repeat 395 670 IPR016024 -
Alju03g1443 716 SMART Ubox_2 292 355 IPR003613 GO:0004842|GO:0016567
Alju03g1443 716 SMART arm_5 422 462 IPR000225 GO:0005515
Alju03g1443 716 SMART arm_5 464 505 IPR000225 GO:0005515
Alju03g1443 716 SMART arm_5 548 586 IPR000225 GO:0005515
Alju03g1443 716 SMART arm_5 507 547 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1443 Alju-ChrAlju03 42809168 42811318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1443 1 716 U-box Gene Family AT1G29340 67.439 0.0 928