Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1428 ATGAAAACACCACCGAGTAACAAAACGAAGGCCGGGAGGAGGACGACGACGAAGTCATCGTCCAGTAGAGGCCATCACAGGTTCGTCGGTGTTCGTCAGAGGCCGTCGGGAAGATGGGTGGCCGAGATCAAAGACTCGCTTCGGAAGGTCAGGCTCTGGCTCGGAACTTTCGACACCGCAGAAGATGCAGCTCGGGCCTACGACGCCGCCGCACGCGCCTTGCGTGGTGCAAATGCTCGCACCAACTTTGAACTGCCCGATCATTCCATTGGCGGCGGTTTTAGGTACGCGCCGGACAACATGGAGCCCTTCTCGTTCGAGGATATGCCAGAGGCTGGTGATGATTCAGATACTGGACTTCTTGGTGCTCTCAGAGCCAAATTGTGTGATGACAAGGGAAAGACATATTCAAAGCCTACCTGTATTATTGGGTCTAGTGTGACTTCAAACTCATCAACTACGCATAATCATTCTGGGAGCACAGAAATATCAATCACCTCATCAAATCCCACCAAAGCTAAGAGAGTGAATATTGTTTCAGAACCTGTGGATCCTGAAACGACGACCATGAGGAGCGTGAACTTGGGCTGGTCCAACGATATTTCATGGCAGTCACAGACGAGGACGAACCATGAGGGCTCTGAAAGTGGCTTGCTTGCCGATGCTGTTTGTGGAGGCACGGCTTCGTGGCCTTTTTCTGCGGCGGATCATGAGCCGGAGTCCACCTTACATGGCGTCTTTAGTTATACTCCCAAGGTTTGTTCAGATCATGTTTTATCCAGCAACGATAAGAATGGTCAAATGAAGAGTGTGGTGAGCTTACAGATAAATCAAATTGGTGGAACGTCGTCGTCTGATCAGTGCTACTTGTGGACACCTGAGCAACAACAGTCGTTCGTGCACTGTGATAATAACAACAGTTGGTTTAGTTCCGGTGGCTCTTGGGACCCACTGCTCTATGCTTCTTCCCAGCTTGGTTGA 981 0.5066 MKTPPSNKTKAGRRTTTKSSSSRGHHRFVGVRQRPSGRWVAEIKDSLRKVRLWLGTFDTAEDAARAYDAAARALRGANARTNFELPDHSIGGGFRYAPDNMEPFSFEDMPEAGDDSDTGLLGALRAKLCDDKGKTYSKPTCIIGSSVTSNSSTTHNHSGSTEISITSSNPTKAKRVNIVSEPVDPETTTMRSVNLGWSNDISWQSQTRTNHEGSESGLLADAVCGGTASWPFSAADHEPESTLHGVFSYTPKVCSDHVLSSNDKNGQMKSVVSLQINQIGGTSSSDQCYLWTPEQQQSFVHCDNNNSWFSSGGSWDPLLYASSQLG 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1428 326 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Alju03g1428 326 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Alju03g1428 326 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Alju03g1428 326 CDD AP2 27 84 IPR001471 GO:0003700|GO:0006355
Alju03g1428 326 MobiDBLite consensus disorder prediction 1 32 - -
Alju03g1428 326 MobiDBLite consensus disorder prediction 148 169 - -
Alju03g1428 326 MobiDBLite consensus disorder prediction 1 18 - -
Alju03g1428 326 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Alju03g1428 326 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Alju03g1428 326 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 14 207 - -
Alju03g1428 326 FunFam ethylene-responsive transcription factor RAP2-11 26 85 - -
Alju03g1428 326 SUPERFAMILY DNA-binding domain 28 84 IPR016177 GO:0003677
Alju03g1428 326 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1428 Alju-ChrAlju03 42672395 42673375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1428 14 83 AP2-EREBP Transcription Factor Family AT5G19790 65.714 4.83e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju03g1428 AP2 6.7e-14 CL0081