Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1417 ATGGATCAGGCAAGAAAGCCAGAGAGTGATGAGGTATCGGATCTCGTTGATGAAGGGACAGGACAGAAAACAACTGATTCGGTTGAAGGGTCTGCCGATGGAGTAGCTGGGGGCAACTTGAATGGAGCTATCAAAAGTGGAGATGTGACTTCAGAAGAGATGCGTAATGATCCGGGATTGAATAAGAAACTACATGAGGCCCCTGCAGGAGCTATGGATCAGGGCATGCGTGATCAGAAAAATACCAGTGATACATTCCTCGTAGTTGATCAAGGAACAAGTTATAATTCAAGGAATTTGCTTAACAGTGCTGTACTTGAGACCGTGGTTGTAATAGATTCTGCTGAGACAGAGGGTGTGAATGGAGATAATAGGAAGTTGGAAGCCAGGGTCAATGAGTCGGAGTTGAACAAGGCATCCATGAAATCTCCAAAACGGCCGTCTGAAGCGGATAAAAATTCATATGTGATCAATATAAAGTCTGGTAGCTGCAGAGAATTTAGCGAGAATGTGGAGGGTGAAAGGATTTGTAGGATTTGCCATCTTGCTTCTGGGCAACCATCAGATTCAGCAGCTGCTAGCCCTACAAACAGTGCTTCTAATGGAGATTTAATTCCGCTTGGTTGTGCGTGTAAAGATGAGCTGGGTATTGCGCACAGCCATTGTGCTGAGGCATGGTTCAAGTTAAAAGGAAACAGATTGTGTGAAATATGTGGTGAAACTGCCAAAAATGTTTCGGGCGTTGCTGATCATGGATTTATGGAAGAGTGGAATGAAAGAACATTCATTGACAACCATAGCACCTCGTCTGGCATGTGTTGTGGATGCTGGCGTGGACAGCCATTTTGTAACTTCTTGATGGCTTGCCTGGTGATAGCTTTTGTTCTGCCATGGTTTTTCCGTGTAAATATGTTCTGA 918 0.4444 MDQARKPESDEVSDLVDEGTGQKTTDSVEGSADGVAGGNLNGAIKSGDVTSEEMRNDPGLNKKLHEAPAGAMDQGMRDQKNTSDTFLVVDQGTSYNSRNLLNSAVLETVVVIDSAETEGVNGDNRKLEARVNESELNKASMKSPKRPSEADKNSYVINIKSGSCREFSENVEGERICRICHLASGQPSDSAAASPTNSASNGDLIPLGCACKDELGIAHSHCAEAWFKLKGNRLCEICGETAKNVSGVADHGFMEEWNERTFIDNHSTSSGMCCGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1417 305 PANTHER ZINC FINGER, RING-CH-TYPE 47 305 - -
Alju03g1417 305 SMART ringv_2 176 239 IPR011016 GO:0008270
Alju03g1417 305 MobiDBLite consensus disorder prediction 123 151 - -
Alju03g1417 305 MobiDBLite consensus disorder prediction 1 65 - -
Alju03g1417 305 MobiDBLite consensus disorder prediction 1 17 - -
Alju03g1417 305 ProSiteProfiles Zinc finger RING-CH-type profile. 169 245 IPR011016 GO:0008270
Alju03g1417 305 Pfam RING-variant domain 177 238 IPR011016 GO:0008270
Alju03g1417 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 249 IPR013083 -
Alju03g1417 305 MobiDBLite consensus disorder prediction 123 149 - -
Alju03g1417 305 SUPERFAMILY RING/U-box 174 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1417 Alju-ChrAlju03 42623448 42626584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1417 106 304 C3H Transcription Factor Family AT5G05830 36.232 4.63e-30 111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju03g1417 03 42623448 42626584 Alju03g1417 03 42623448 42626584 ECH