LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju03g1415	ATGGGTCTTTCCAAAAGTTACCCAACGGGACGGAATGTAGGTTTATCTGTGGGAAAAAGGAAAGCTGGAATCACATGGACTTGTCTTCGCTTGCTGGGACCTCCATTTCCTGGTCCTCTTTCACACCATGATCTCCTCCTCCTCCTCCTTCTCCCTCTCTTTCTTCCTTCCTTAGATTCCTCTTTTACTGTTCCCTCCTCCATGGCCGATGATAAGGAGATGTCTGCCTCTGTCAATGGGAACGAGTCACTCACCGGTCACATCATATCTACAACAATTGGAGGCAAAAATGGGGAACCCAAACAGACTATTAGTTACATGGCAGAACGTGTTGTGGGAACTGGATCATTTGGGATTGTTTTCCAGGCAAAATGTTTAGAAACTGGCGAGGCAGTGGCCATTAAGAAGGTTTTACAAGACAGAAGATACAAAAGTCGTGAATTACAGTTAATGCGAGTGATGGACCATCCAAATGTGATCTCCTTGAAGCATTGTTTCTTTTCCACTACAAGTACAAATGAGCTATATCTGAATCTGGTGATGGAATATGTTCCCTTGAGCCTGTATCAGGTCATAATGCCTTATAGCAATGCTAATCAGAGAATGCCACTTATTTATGTAAAACTTTATATGTACCAGATTTTCAGGGGTTTGGCTTATATCCACACCGTTCCAGGAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTGGATACTCATACACATCAAGTTAAGCTATGTGATTTTGGAAGTGCAAAAGTGCTGGTCAGAGGGGAATCTAATATATCATACATATGTTCACGCTTCTATCGAGCTCCAGAACTAATATTTGGTGCCACAGAGTATACTACCTCAATTGACATTTGGTCAGCTGGCTGTGTCCTAGCTGAACTTCTCTTAGGCCAGCCTTTGTTTCCTGGTGGAAGTGCAGTAGACCAGCTTGTGGAGATTATAAAGGTTCTTGGAACACCCACCCGGGAGGAAGTCCGTTGTATGAATCCCAATTATAATGATTTTAGGTTCCCCCAGCGAAAAGCATGCCCATGGCATAAGATATTTGACAAAAGGATGCCTCCAGAAGCAATTGATCTTGTTTCCCGGCTTCTGCAGTACTCCCCTAGTCTTCGGTGCACTGCGCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGAGAACCTAATGCACGGCTGTCAAATGGGCGTCCATTTCCAGTATTATTCAACTTTGGACAGGAACTATCTGGAGCATCTCCAGAACTCGTTAATAGGTTGATACCAGACCATGTGAAGCGGCAAATAGGGCTACAATTCACGCATCTGACAGGAACATGA	1341	0.4392	MGLSKSYPTGRNVGLSVGKRKAGITWTCLRLLGPPFPGPLSHHDLLLLLLLPLFLPSLDSSFTVPSSMADDKEMSASVNGNESLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKSRELQLMRVMDHPNVISLKHCFFSTTSTNELYLNLVMEYVPLSLYQVIMPYSNANQRMPLIYVKLYMYQIFRGLAYIHTVPGVCHRDLKPQNILVDTHTHQVKLCDFGSAKVLVRGESNISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGGSAVDQLVEIIKVLGTPTREEVRCMNPNYNDFRFPQRKACPWHKIFDKRMPPEAIDLVSRLLQYSPSLRCTALEACAHPFFDELREPNARLSNGRPFPVLFNFGQELSGASPELVNRLIPDHVKRQIGLQFTHLTGT	446

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju03g1415	446	SMART	serkin_6	106	390	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju03g1415	446	Gene3D	Transferase(Phosphotransferase) domain 1	187	433	-	-
	Alju03g1415	446	ProSiteProfiles	Protein kinase domain profile.	106	390	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju03g1415	446	FunFam	Glycogen synthase kinase-3 beta	90	185	-	-
	Alju03g1415	446	ProSitePatterns	Protein kinases ATP-binding region signature.	112	136	IPR017441	GO:0005524
	Alju03g1415	446	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	73	435	-	-
	Alju03g1415	446	Pfam	Protein kinase domain	106	390	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju03g1415	446	Gene3D	Phosphorylase Kinase; domain 1	91	185	-	-
	Alju03g1415	446	CDD	STKc_GSK3	101	393	IPR039192	-
	Alju03g1415	446	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	227	239	IPR008271	GO:0004672\|GO:0006468
	Alju03g1415	446	SUPERFAMILY	Protein kinase-like (PK-like)	105	414	IPR011009	-
	Alju03g1415	446	FunFam	Shaggy-related protein kinase kappa	186	433	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju03g1415	Alju-ChrAlju03	42608505	42612618	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju03g1415	110	428	MAP Kinase Gene Family	AT3G59790	34.251	2.17e-57	192

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Alju03g1415		Pkinase	4.2e-65	CL0016