Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1407 ATGTATCGATCAGTCCCACCTTTGACACCCATCGACAGATTCTTATGGAGCCAGCACGCACAGAATAACATGGCTTCTACTGTTTGGCCTAACAGTGGATCAGGATCAAGTTTCATTGATGGGTTTGTGTTACCAAATGAGCAAGCTTTGAACTTGACACACACTCGAGTCCCACCATTGTGCCTCAGAAACAGAGTTCTGGGTAAGCATCATGATGGTGGTGGTGATGCTGTGGGAAGGAGAATTAATAAGAAAGGGTCTCGTGTGTCTTTGATCAAAGGCCAGTGGACTGATGAAGAAGACAGGAAATTGGTGAGATTGGTGAATCAACATGGTGTGCAGAAATGGGCTCAAATAGCTGAGAAATTGGATGGAAGAGTGGGCAAGCAGTGTAGAGAGAGATGGCATAATCATTTGCGCCCCGATATTAAGAAAGAGAGTTGGAGTGAAGAAGAAGAGAGGATACTGGTGGAAACACATGCCAAGGTTGGGAATCGTTGGGCAGAAATAGGAAAGAGCATTCCAGGAAGAACAGAGAACGCAATCAAGAACCATTGGAATGCCACTAAAAGAAGACAGACTTCAAAGAGAAAGAAGAAATTCACACACACATCACACAAAAGGACACGTCCCTCTATACTTGAAGACTACATCAGAAGCAAGACCCTGCTAATAAATAACACAGCCCAGAAGAACAACATCGCAGAAAACCAATCTGAACCCTCTTCTGAATCTGCTCTTGTTAACGCCAACTCTGTAATAGCTGAACCATATGATGAGGAATTGCTCTTCTTGCAAGGATTTTTTGCCGACAATCTGAATCAGAAACAGTATCTTTCTGCCGCTGATGCTGAACACTCTGAGAATTCTTCAACTTGCTTCTCGTTGGACTTTTGTCAAACAGATGGTGACCATCCTTTTATCTCTGACGTGACTGCCACAGGGTCTGGATTTGTGTATCCCATTTCAAACCCAGATAACAAAACAAGCTTCTATGAGAATCTCCTCACTGAGGAGGCTGTCACTCCCATTAAACACTCCCAATCTGATCTTTATCTCTCCCACTTGCTCAATGGACCACCCTCCAATTCATCACTTCTATGTGGGTATGGAAATCATCCAAACCTGAACATGAATTTGCTTATGGGGTATCAAGACAATAGTTCAGAACGAAAGCCAGAGATGGATTTGATGGAATTGGTTTCTTCAAAGTTTTCTCCAAGCACCAACAGTAGCGTTTGA 1242 0.4332 MYRSVPPLTPIDRFLWSQHAQNNMASTVWPNSGSGSSFIDGFVLPNEQALNLTHTRVPPLCLRNRVLGKHHDGGGDAVGRRINKKGSRVSLIKGQWTDEEDRKLVRLVNQHGVQKWAQIAEKLDGRVGKQCRERWHNHLRPDIKKESWSEEEERILVETHAKVGNRWAEIGKSIPGRTENAIKNHWNATKRRQTSKRKKKFTHTSHKRTRPSILEDYIRSKTLLINNTAQKNNIAENQSEPSSESALVNANSVIAEPYDEELLFLQGFFADNLNQKQYLSAADAEHSENSSTCFSLDFCQTDGDHPFISDVTATGSGFVYPISNPDNKTSFYENLLTEEAVTPIKHSQSDLYLSHLLNGPPSNSSLLCGYGNHPNLNMNLLMGYQDNSSERKPEMDLMELVSSKFSPSTNSSV 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1407 413 FunFam Transcriptional activator Myb isoform A 92 145 - -
Alju03g1407 413 MobiDBLite consensus disorder prediction 189 207 - -
Alju03g1407 413 Pfam Myb-like DNA-binding domain 96 153 - -
Alju03g1407 413 PANTHER MYB PROTEIN-RELATED 93 231 - -
Alju03g1407 413 ProSiteProfiles Myb-like domain profile. 140 190 IPR001005 -
Alju03g1407 413 Gene3D - 92 144 - -
Alju03g1407 413 ProSiteProfiles Myb-like domain profile. 88 139 IPR001005 -
Alju03g1407 413 CDD SANT 96 139 IPR001005 -
Alju03g1407 413 SMART sant 144 192 IPR001005 -
Alju03g1407 413 SMART sant 92 141 IPR001005 -
Alju03g1407 413 MobiDBLite consensus disorder prediction 189 209 - -
Alju03g1407 413 SUPERFAMILY Homeodomain-like 90 186 IPR009057 -
Alju03g1407 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 143 IPR017930 -
Alju03g1407 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 194 IPR017930 -
Alju03g1407 413 Gene3D - 146 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1407 Alju-ChrAlju03 42542466 42544547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1407 1 408 MYB Transcription Factor Family AT5G58850 38.512 3.51e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju03g1407 Myb_DNA-bind_6 8.3e-19 CL0123