Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju03g1384 ATGGTTTACTGCTCTTATAATTCGATTTCTTCATCTGGGTCTGATGTCTCGAGGCTGTTCGATCCAACTTCGAATAAGATTGTTGTTGATTCTAACGGGGTTTCGCAGAGTGGGTTGGCGTCACCCAATTCGTTGGTCTTGAATAGTGAGAAGGAGCATCTGGTTAATTCCCCTATGAAAATTGGAAAGAAAGAGGCGTCTGAGGCGAAAGCTTTGGCGGCTATGAAGAACCACAGTGAAGCAGAGAGAAGGAGAAGGGAGAGAATTAATGGTCATCTTGATATACTTCGTGGTCTTGTGCCCTGCAATGCGAAGATGGATAAGGCAACGTTATTGGCTGAAGTTATCAACCAAGTTAAGTTACTGAAGAAGAATGCAACGGAAGCAAGCAGGGGTTTTCTCATCCCAATGGATGATGATGAAGTTAAAGTTGAACCACACAAGTATGAAGGAAGAGAAGGATCAATGTTTTACATGGCATCTATATGTTGCGATTACCGGCCGGAGCTACTATCCGACCTAAGACAGGCTCTTGATGGCCTTCAACTACAACTGATGAGGGCAGAGATATCAACTTTGGGAGGAAGAGTGAAGAATGTATTTTTCTTTAGATGCTGCAAAACAGAACATATTAATATTGAAGCATGCCAACTTGTTCCCAGTACTGTCCACCAGGTACTAAGTTCTGTACTAGAGAAGGCTTCTAGCTCACTGGAATACTCTCTGGGAATGTCACTTCGAAGCAAGCGTAGAAGACTTTGCTTCGTTGAAACATCAACTTCCTCATGA 789 0.4309 MVYCSYNSISSSGSDVSRLFDPTSNKIVVDSNGVSQSGLASPNSLVLNSEKEHLVNSPMKIGKKEASEAKALAAMKNHSEAERRRRERINGHLDILRGLVPCNAKMDKATLLAEVINQVKLLKKNATEASRGFLIPMDDDEVKVEPHKYEGREGSMFYMASICCDYRPELLSDLRQALDGLQLQLMRAEISTLGGRVKNVFFFRCCKTEHINIEACQLVPSTVHQVLSSVLEKASSSLEYSLGMSLRSKRRRLCFVETSTSS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju03g1384 262 Pfam Helix-loop-helix DNA-binding domain 77 122 IPR011598 GO:0046983
Alju03g1384 262 SMART finulus 79 128 IPR011598 GO:0046983
Alju03g1384 262 PANTHER TRANSCRIPTION FACTOR BHLH30 35 255 IPR045847 GO:0003700|GO:0006355
Alju03g1384 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 128 IPR036638 GO:0046983
Alju03g1384 262 Coils Coil 171 191 - -
Alju03g1384 262 CDD ACT_UUR-ACR-like 161 202 - -
Alju03g1384 262 Gene3D - 68 131 IPR036638 GO:0046983
Alju03g1384 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 122 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju03g1384 Alju-ChrAlju03 42327586 42330042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju03g1384 60 253 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.051 2.00e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju03g1384 HLH 9.2e-10 No_clan